Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq6720 670 0.0 seq6719 91.5 2e-13 >seq6720 Length=135362 Score = 670 bits (742), Expect = 0.0 Identities = 745/997 (75%), Gaps = 10/997 (1%) Strand=Plus/Plus Query 103166 TCTGCAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATA 103225 ||| ||| ||| | ||| | |||||||||||||||||||| |||||||| ||||||||| Sbjct 36403 TCTACAGAAGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATTACTTCCATA 36462 Query 103226 CCCAGACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCA 103285 || | ||| ||||||| | ||| ||||| ||||| || |||||||| || |||| Sbjct 36463 CCTAAGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGTGAATCA 36522 Query 103286 AGGATGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGT-GCTAACACCAAG 103344 | | || |||||||||||||| ||||| | |||||| ||||| || | ||| ||| | Sbjct 36523 ACAACTGATTGGTTGAAGTTGAACCCGTTTAAGTTGAATGCCATAGTTGATAA-ACCTAA 36581 Query 103345 TGCGGTGAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGA 103404 || |||||||| || | | ||| || | || Sbjct 36582 AGCAGTGAACCAAATGCAGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGA 36641 Query 103405 GTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGAT 103464 ||||||||||||||||||||||||||| |||||||| |||||||| || || |||||||| Sbjct 36642 GTTGTTGAATGATGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGAT 36701 Query 103465 GTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGT 103524 |||||| |||||||| ||||| || || |||||||| | ||| |||||| ||||||| Sbjct 36702 GTTGTAAGTCTCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCAGATTCGTTTTCAGT 36761 Query 103525 CGTCTCACGAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACC 103584 || ||||| | | || || || || | |||||||||||||| ||| | |||||| Sbjct 36762 AGTTTCACGGATTAATGATGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACC 36821 Query 103585 ACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGC 103644 ||| || || |||||||| || | ||||||||| |||||||| | |||||| || || || Sbjct 36822 ACCAAATACACCAGCAACACCTAACATGTGGAATGGGTGCATTAAAATGTTGTGCTCAGC 36881 Query 103645 TTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAA 103704 |||||| || | |||| ||||||| || || || ||||| ||||||||| |||| ||||| Sbjct 36882 TTGGAATACGATCATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAA 36941 Query 103705 CGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGA 103764 |||||||| || | ||||||| ||||||||||| | ||||| || || ||||| || Sbjct 36942 AGAACCTTGTCCGATTGGGTAGATTAAGAATACTGCAGTTGCAGCAGCTACTGGAGCTGA 37001 Query 103765 GTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCC 103824 ||| || ||||||||||| || ||||| || | |||||| || | |||||||||||| || Sbjct 37002 GTAAGCAACACAGATCCAAGGACGCATACCTAAACGGTAAGAAAGTTCCCACTCACGACC 37061 Query 103825 CAT---ATATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACC 103881 ||| | ||||| | || | | ||||||| | || | | |||| |||||||||| Sbjct 37062 CATGTAAGATGCA---ACACCTAATAAGAAGTGGCAAACGATTAATTGGTAAGGACCACC 37118 Query 103882 GTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAAT 103941 ||| || | |||||| || | ||| || ||||||||||| || |||||||||||||| || Sbjct 37119 GTTGTATAACCACTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGAT 37178 Query 103942 TGCGTTGGAGGAGGGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACC 104001 |||||| || | || | || |||||||||||||||||||||||||| | | ||||| Sbjct 37179 TGCGTTAGATGTAGGGATAATAGCACCAGAGATGATGTTGTTACCGTATAATAAAGAACC 37238 Query 104002 AGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGAT 104061 || || || ||||| || || |||||||| || ||||| ||||| | ||| | | || Sbjct 37239 AGAAACTGGCTCACGGATACCATCGATATCTACTGGAGGAGCTGCGATGAAGCCGATAAT 37298 Query 104062 GAA-GCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACAT 104120 ||| ||||| || || | || | |||||||| | ||||||||||||||| | | Sbjct 37299 GAATACAGAT-GTAGCTGTTAATAAGCAAGGGATCATTAACACACCGAACCAACCGATGT 37357 Query 104121 AGAGACGGTTGTTTGTCGATGTAACCCACTCGCAGAA 104157 | | |||||| | || || || | |||||| || || Sbjct 37358 ATAAACGGTTTTCAGTTGAAGTGATCCACTCACAAAA 37394 Score = 670 bits (742), Expect = 0.0 Identities = 745/997 (75%), Gaps = 10/997 (1%) Strand=Plus/Minus Query 103166 TCTGCAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATA 103225 ||| ||| ||| | ||| | |||||||||||||||||||| |||||||| ||||||||| Sbjct 109245 TCTACAGAAGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATTACTTCCATA 109186 Query 103226 CCCAGACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCA 103285 || | ||| ||||||| | ||| ||||| ||||| || |||||||| || |||| Sbjct 109185 CCTAAGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGTGAATCA 109126 Query 103286 AGGATGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGT-GCTAACACCAAG 103344 | | || |||||||||||||| ||||| | |||||| ||||| || | ||| ||| | Sbjct 109125 ACAACTGATTGGTTGAAGTTGAACCCGTTTAAGTTGAATGCCATAGTTGATAA-ACCTAA 109067 Query 103345 TGCGGTGAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGA 103404 || |||||||| || | | ||| || | || Sbjct 109066 AGCAGTGAACCAAATGCAGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGA 109007 Query 103405 GTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGAT 103464 ||||||||||||||||||||||||||| |||||||| |||||||| || || |||||||| Sbjct 109006 GTTGTTGAATGATGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGAT 108947 Query 103465 GTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGT 103524 |||||| |||||||| ||||| || || |||||||| | ||| |||||| ||||||| Sbjct 108946 GTTGTAAGTCTCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCAGATTCGTTTTCAGT 108887 Query 103525 CGTCTCACGAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACC 103584 || ||||| | | || || || || | |||||||||||||| ||| | |||||| Sbjct 108886 AGTTTCACGGATTAATGATGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACC 108827 Query 103585 ACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGC 103644 ||| || || |||||||| || | ||||||||| |||||||| | |||||| || || || Sbjct 108826 ACCAAATACACCAGCAACACCTAACATGTGGAATGGGTGCATTAAAATGTTGTGCTCAGC 108767 Query 103645 TTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAA 103704 |||||| || | |||| ||||||| || || || ||||| ||||||||| |||| ||||| Sbjct 108766 TTGGAATACGATCATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAA 108707 Query 103705 CGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGA 103764 |||||||| || | ||||||| ||||||||||| | ||||| || || ||||| || Sbjct 108706 AGAACCTTGTCCGATTGGGTAGATTAAGAATACTGCAGTTGCAGCAGCTACTGGAGCTGA 108647 Query 103765 GTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCC 103824 ||| || ||||||||||| || ||||| || | |||||| || | |||||||||||| || Sbjct 108646 GTAAGCAACACAGATCCAAGGACGCATACCTAAACGGTAAGAAAGTTCCCACTCACGACC 108587 Query 103825 CAT---ATATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACC 103881 ||| | ||||| | || | | ||||||| | || | | |||| |||||||||| Sbjct 108586 CATGTAAGATGCA---ACACCTAATAAGAAGTGGCAAACGATTAATTGGTAAGGACCACC 108530 Query 103882 GTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAAT 103941 ||| || | |||||| || | ||| || ||||||||||| || |||||||||||||| || Sbjct 108529 GTTGTATAACCACTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGAT 108470 Query 103942 TGCGTTGGAGGAGGGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACC 104001 |||||| || | || | || |||||||||||||||||||||||||| | | ||||| Sbjct 108469 TGCGTTAGATGTAGGGATAATAGCACCAGAGATGATGTTGTTACCGTATAATAAAGAACC 108410 Query 104002 AGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGAT 104061 || || || ||||| || || |||||||| || ||||| ||||| | ||| | | || Sbjct 108409 AGAAACTGGCTCACGGATACCATCGATATCTACTGGAGGAGCTGCGATGAAGCCGATAAT 108350 Query 104062 GAA-GCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACAT 104120 ||| ||||| || || | || | |||||||| | ||||||||||||||| | | Sbjct 108349 GAATACAGAT-GTAGCTGTTAATAAGCAAGGGATCATTAACACACCGAACCAACCGATGT 108291 Query 104121 AGAGACGGTTGTTTGTCGATGTAACCCACTCGCAGAA 104157 | | |||||| | || || || | |||||| || || Sbjct 108290 ATAAACGGTTTTCAGTTGAAGTGATCCACTCACAAAA 108254 Score = 508 bits (562), Expect = 7e-139 Identities = 731/1020 (72%), Gaps = 8/1020 (1%) Strand=Plus/Minus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | || ||||| ||||| || ||||| ||| ||| || || || || Sbjct 122714 AGAGCGTTACCACGAGGTAATACTTCTTCTGGGAATACTAAGCGTTCGTGTGGCTGGTCT 122655 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 || |||| ||| ||||| | ||||||||| | || | ||| || |||||||| || Sbjct 122654 TGTGCAGCCATCCAAGCACGGATACCTTCATTAAGAAGAAGGTTTTTAGTGTAGAAAGTT 122595 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || ||||||||||| || || | |||||||| || || ||||| |||||||| | | Sbjct 122594 TCAAATTCTGGATCTTCAGCAGCACGAATCTCTTGTGAAACGAAGTCGTAAGCACGTAAG 122535 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || ||||| | ||| | || ||| || | | |||| ||||| | ||||||||||| Sbjct 122534 TTAAGAGCTAAACCTACAACACCAATAGCAGACATCCAAAGACCTGTCACAGGAACAAAT 122475 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 | ||||||||| || ||||| | || || ||| || | |||||| ||||| |||||| Sbjct 122474 AACATAAAGAAGTGTAACCAACGTTTGTTTGAAAAAGCTACACCAAAAATTTGTGACCAG 122415 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 || | || ||||| ||||| || ||||| ||||| |||| || | | ||||| | Sbjct 122414 AATCTATTAGCTGTTACCATAGAGTAAGTTTCTTCAGCTTGCGTAGGGTTAAATGCACGG 122355 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || ||||| || |||||||||||| | ||||| || || || || |||| || || Sbjct 122354 AATGTGTTAGCACCATCACCATCTTCGAAAAGAGTATTTTCTACTGTAGCACCATGAATA 122295 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | | || || | || | | ||| ||||| |||||||| ||||||||||| || Sbjct 122294 GCACATAATAGAGCCGCACCTAAAACACCAGCAACTCCCATCATGTGGAATGGGTTAAGT 122235 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACC-AAA 102248 |||||||| ||||| || || | ||| | | || | || || || |||||||| ||| Sbjct 122234 GTCCAGTTGTGGAAACCTTGGAAGAATAAGATAAAACGGAAAATAGCGGCAACACCAAAA 122175 Query 102249 CGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAA 102308 | |||| || |||||||||| || || || | ||| || || | ||| ||| ||||| Sbjct 122174 CTAGGG-GCGAAGAACCAACCAGATTGACCTAAAGGGTAAATTAAAAATACAGAAACAAA 122116 Query 102309 AACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACG-AATTCCAATTAACCTAG 102367 ||||| || || ||||||| ||||| || || || ||||| || | | | ||| | | Sbjct 122115 TACAGCAATTGGTGCAGAGAAAGCAATTGCGTTATATGGACGTAAGTTTACTGAACGT-G 122057 Query 102368 CCAACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAA 102427 | | || |||||||| | ||| |||||||| | |||| ||||| || || || |||| Sbjct 122056 CAATTTCAAATTGACGTAACATAAAACCAATTAAACCAAAAGCACCATGCAGTGCTACAA 121997 Query 102428 AAGCCCAGAGTCCCCCAAGTTG-GACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCC 102486 ||| ||| | || || | ||| ||| || || || || |||||||||||||| ||| Sbjct 121996 AAGTCCATAAACCACCTAATTGACACCAACGTG-TAAAGTCACCTTGAGCTTCAGGTCCC 121938 Query 102487 CAAAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGG 102546 |||| | | | ||||||| ||||| || || || || || || ||||| || | | Sbjct 121937 CAAATAAATAATAAAGAATGAGCCATACTGTTTGCTGGAGTCGAAACTGCAGCAGTTAAG 121878 Query 102547 AAATTAGCACCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAAC 102606 || ||| |||||| | |||| || || | || || || ||||| |||||| |||| Sbjct 121877 AAGTTACAACCTTCTAAGTAAGAAGTTGCTAAACCATGTGTGTACCAAGAAGTAACAAAT 121818 Query 102607 GTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCA 102666 || || ||||||| ||| || || | ||| | ||| ||| || || | ||| || || Sbjct 121817 GTTGTCCCAGTAAACCAACCACCTAATGCAAAATACGCACAAGGTAATAAAAGAAGACCT 121758 Query 102667 GACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGAT-GTCAAACCA 102725 |||||||| ||||| ||||| || ||| | | |||||||| || || ||||||||| Sbjct 121757 GACCAACCTACAAAAACAAAACGGTCTTGACGTAACCAGTCAT-CACAATCGTCAAACCA 121699 Score = 82.4 bits (90), Expect = 1e-10 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 74138 TAGGAGACTCGAACTCCTGACATCCTGCTTGCAAAGCAGGCGCTCTACCAGCTGAGCTAA 74197 ||||||| ||||||||||||| ||||| ||||||||||| ||||||||| ||||||||| Sbjct 40329 TAGGAGAGTCGAACTCCTGACCCCCTGCGTGCAAAGCAGGTGCTCTACCAACTGAGCTAA 40270 Score = 82.4 bits (90), Expect = 1e-10 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 74138 TAGGAGACTCGAACTCCTGACATCCTGCTTGCAAAGCAGGCGCTCTACCAGCTGAGCTAA 74197 ||||||| ||||||||||||| ||||| ||||||||||| ||||||||| ||||||||| Sbjct 105319 TAGGAGAGTCGAACTCCTGACCCCCTGCGTGCAAAGCAGGTGCTCTACCAACTGAGCTAA 105378 >seq6719 Length=93840 Score = 91.5 bits (100), Expect = 2e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 74815 AGGACTTGAACCTCCACGGATAAATCCACTGGAACCTAAACCCAGCGCGTCTACCAATTC 74874 ||||||||||||| |||| |||||| |||| ||||||||||| | ||||||||||||||| Sbjct 38414 AGGACTTGAACCTGCACGAATAAATTCACTAGAACCTAAACCTAACGCGTCTACCAATTC 38473 Query 74875 CGCCA 74879 ||||| Sbjct 38474 CGCCA 38478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633460384857600