Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq6720 558 1e-154 >seq6720 Length=135362 Score = 558 bits (618), Expect = 1e-154 Identities = 719/992 (72%), Gaps = 0/992 (0%) Strand=Plus/Plus Query 21462 TCCACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAG 21521 || || || || | ||| | ||||||||||| ||||| || || ||||| || || | Sbjct 36403 TCTACAGAAGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATTACTTCCATA 36462 Query 21522 CCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCT 21581 || | ||| |||||||| | ||||||||||| ||||| | || | || | | | | Sbjct 36463 CCTAAGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGTGAATCA 36522 Query 21582 AGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGC 21641 | | |||||||| |||||||| || || |||||||| ||||| || || | || | Sbjct 36523 ACAACTGATTGGTTGAAGTTGAACCCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAA 36582 Query 21642 GCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAA 21701 |||| |||||||| | | || ||||| ||||| | ||||| || | ||| || Sbjct 36583 GCAGTGAACCAAATGCAGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAG 36642 Query 21702 TTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATA 21761 || || || || ||||||||||| | |||||||| || ||||| ||||| || || Sbjct 36643 TTGTTGAATGATGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATG 36702 Query 21762 TTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTC 21821 |||||||||||||| ||||||||||| |||||||| | ||| || | | |||||| Sbjct 36703 TTGTAAGTCTCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCAGATTCGTTTTCAGTA 36762 Query 21822 GTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCA 21881 || ||||| || | ||| || || || | |||||||||||| ||||| || ||| Sbjct 36763 GTTTCACGGATTAATGATGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCA 36822 Query 21882 CCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCC 21941 |||||||| || || ||||| | |||||| || || ||||| | ||| ||||||||||| Sbjct 36823 CCAAATACACCAGCAACACCTAACATGTGGAATGGGTGCATTAAAATGTTGTGCTCAGCT 36882 Query 21942 TGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAA 22001 ||||| || | |||| ||||||| || || || || || || |||||| ||||||| ||| Sbjct 36883 TGGAATACGATCATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAA 36942 Query 22002 GAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAG 22061 || || ||||| | || || | | ||| || ||||| ||||| || || ||||| ||| Sbjct 36943 GAACCTTGTCCGATTGGGTAGATTAAGAATACTGCAGTTGCAGCAGCTACTGGAGCTGAG 37002 Query 22062 TACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCC 22121 || |||||| ||||||| || | ||| |||| || || |||||||||||| || ||| Sbjct 37003 TAAGCAACACAGATCCAAGGACGCATACCTAAACGGTAAGAAAGTTCCCACTCACGACCC 37062 Query 22122 ATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTG 22181 ||||||| || || | | ||||||| | ||| | | |||| | ||||| |||||| Sbjct 37063 ATGTAAGATGCAACACCTAATAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTG 37122 Query 22182 TACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCA 22241 || | ||| || || | | ||||||||||||||||||||||||||| || ||||| || Sbjct 37123 TATAACCACTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCG 37182 Query 22242 TTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCG 22301 ||| | || | | || || || |||||||||||||| || || | || |||| Sbjct 37183 TTAGATGTAGGGATAATAGCACCAGAGATGATGTTGTTACCGTATAATAAAGAACCAGAA 37242 Query 22302 ACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAA 22361 || || || ||||| |||||||| || || || || || | | ||| ||||||| || Sbjct 37243 ACTGGCTCACGGATACCATCGATATCTACTGGAGGAGCTGCGATGAAGCCGATAATGAAT 37302 Query 22362 CAAGTTGTAGCGGCAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGA 22421 || |||||| | | | ||| || ||||| | || |||||||| || | || | | Sbjct 37303 ACAGATGTAGCTGTTAATAAGCAAGGGATCATTAACACACCGAACCAACCGATGTATAAA 37362 Query 22422 CGGTTATTAGTAGAGGTGACCCAGGAACAAAA 22453 ||||| | ||| || |||| ||| |||||| Sbjct 37363 CGGTTTTCAGTTGAAGTGATCCACTCACAAAA 37394 Score = 558 bits (618), Expect = 1e-154 Identities = 719/992 (72%), Gaps = 0/992 (0%) Strand=Plus/Minus Query 21462 TCCACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAG 21521 || || || || | ||| | ||||||||||| ||||| || || ||||| || || | Sbjct 109245 TCTACAGAAGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATTACTTCCATA 109186 Query 21522 CCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCT 21581 || | ||| |||||||| | ||||||||||| ||||| | || | || | | | | Sbjct 109185 CCTAAGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGTGAATCA 109126 Query 21582 AGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGC 21641 | | |||||||| |||||||| || || |||||||| ||||| || || | || | Sbjct 109125 ACAACTGATTGGTTGAAGTTGAACCCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAA 109066 Query 21642 GCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAA 21701 |||| |||||||| | | || ||||| ||||| | ||||| || | ||| || Sbjct 109065 GCAGTGAACCAAATGCAGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAG 109006 Query 21702 TTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATA 21761 || || || || ||||||||||| | |||||||| || ||||| ||||| || || Sbjct 109005 TTGTTGAATGATGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATG 108946 Query 21762 TTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTC 21821 |||||||||||||| ||||||||||| |||||||| | ||| || | | |||||| Sbjct 108945 TTGTAAGTCTCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCAGATTCGTTTTCAGTA 108886 Query 21822 GTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCA 21881 || ||||| || | ||| || || || | |||||||||||| ||||| || ||| Sbjct 108885 GTTTCACGGATTAATGATGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCA 108826 Query 21882 CCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCC 21941 |||||||| || || ||||| | |||||| || || ||||| | ||| ||||||||||| Sbjct 108825 CCAAATACACCAGCAACACCTAACATGTGGAATGGGTGCATTAAAATGTTGTGCTCAGCT 108766 Query 21942 TGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAA 22001 ||||| || | |||| ||||||| || || || || || || |||||| ||||||| ||| Sbjct 108765 TGGAATACGATCATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAA 108706 Query 22002 GAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAG 22061 || || ||||| | || || | | ||| || ||||| ||||| || || ||||| ||| Sbjct 108705 GAACCTTGTCCGATTGGGTAGATTAAGAATACTGCAGTTGCAGCAGCTACTGGAGCTGAG 108646 Query 22062 TACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCC 22121 || |||||| ||||||| || | ||| |||| || || |||||||||||| || ||| Sbjct 108645 TAAGCAACACAGATCCAAGGACGCATACCTAAACGGTAAGAAAGTTCCCACTCACGACCC 108586 Query 22122 ATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTG 22181 ||||||| || || | | ||||||| | ||| | | |||| | ||||| |||||| Sbjct 108585 ATGTAAGATGCAACACCTAATAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTG 108526 Query 22182 TACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCA 22241 || | ||| || || | | ||||||||||||||||||||||||||| || ||||| || Sbjct 108525 TATAACCACTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCG 108466 Query 22242 TTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCG 22301 ||| | || | | || || || |||||||||||||| || || | || |||| Sbjct 108465 TTAGATGTAGGGATAATAGCACCAGAGATGATGTTGTTACCGTATAATAAAGAACCAGAA 108406 Query 22302 ACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAA 22361 || || || ||||| |||||||| || || || || || | | ||| ||||||| || Sbjct 108405 ACTGGCTCACGGATACCATCGATATCTACTGGAGGAGCTGCGATGAAGCCGATAATGAAT 108346 Query 22362 CAAGTTGTAGCGGCAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGA 22421 || |||||| | | | ||| || ||||| | || |||||||| || | || | | Sbjct 108345 ACAGATGTAGCTGTTAATAAGCAAGGGATCATTAACACACCGAACCAACCGATGTATAAA 108286 Query 22422 CGGTTATTAGTAGAGGTGACCCAGGAACAAAA 22453 ||||| | ||| || |||| ||| |||||| Sbjct 108285 CGGTTTTCAGTTGAAGTGATCCACTCACAAAA 108254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146196332601600