Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq6720 720 0.0 >seq6720 Length=135362 Score = 720 bits (798), Expect = 0.0 Identities = 757/990 (76%), Gaps = 4/990 (0%) Strand=Plus/Plus Query 124044 CAGATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCA 124103 |||| |||| ||||| |||||||||||| || || | ||| ||||| ||||||||||| | Sbjct 36407 CAGAAGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATTACTTCCATACCTA 36466 Query 124104 AGTTTGCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCAACAA 124163 |||| || | ||| | | ||| |||| || | | || | | |||||||| Sbjct 36467 AGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGTGAATCAACAA 36526 Query 124164 CTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGG 124223 |||||||||| |||||||| || || |||||||||||||| || | | ||| | || | Sbjct 36527 CTGATTGGTTGAAGTTGAACCCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAG 36586 Query 124224 TTAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGT 124283 | ||||| | || | || || || | |||| ||||||||| | | ||||||| Sbjct 36587 TGAACCAAATGCAGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGT 36646 Query 124284 TGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGT 124343 ||||||| || || |||||||| | ||||||||||||||||||||| ||||| ||||||| Sbjct 36647 TGAATGATGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGT 36706 Query 124344 ATGTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTT 124403 | || ||||||||||| || || || ||||| | ||| || || | || || |||| Sbjct 36707 AAGTCTCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCAGATTCGTTTTCAGTAGTTT 36766 Query 124404 CTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGA 124463 | | ||||| || || || || | ||||| ||||| ||||||||||| || || || | Sbjct 36767 CACGGATTAATGATGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCACCAA 36826 Query 124464 ACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGA 124523 | | || || || ||| ||||||||| || ||||||| |||||| ||||| ||||||| Sbjct 36827 ATACACCAGCAACACCTAACATGTGGAATGGGTGCATTAAAATGTTGTGCTCAGCTTGGA 36886 Query 124524 AAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAAC 124583 | |||| ||| |||||||||||||| |||||||| | ||||||||||||||||| |||| Sbjct 36887 ATACGATCATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAAC 36946 Query 124584 CCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAG 124643 | || || | |||||| | ||||||||| || |||||||| |||||| ||||| |||| Sbjct 36947 CTTGTCCGATTGGGTAGATTAAGAATACTGCAGTTGCAGCAGCTACTGGAGCTGAGTAAG 37006 Query 124644 CAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGT 124703 |||||||||||||||||||||| ||||| | ||| || |||||||||| | ||||||| Sbjct 37007 CAACACAGATCCAAGGACGCATACCTAAACGGTAAGAAAGTTCCCACTCACGACCCATGT 37066 Query 124704 ATGCTGAAATACC-AATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATAC 124762 | | || || ||| ||||| ||||||| ||| | || || ||||||||||| || || Sbjct 37067 AAGATGCAACACCTAATAA-GAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTAT 37125 Query 124763 AACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTT 124822 ||||| || || | || || |||||||| |||||||||||||| || ||||| ||||| Sbjct 37126 AACCACTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTA 37185 Query 124823 GATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACT 124882 |||| || | || ||||||||||||||||||||||| ||||| |||||||| | ||| Sbjct 37186 GATGTAGGGATAATAGCACCAGAGATGATGTTGTTACCGTATAATAAAGAACCAGAAACT 37245 Query 124883 GGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAA-ACA 124941 || || | ||| || |||||||| || ||||| ||||| || || | | ||||| ||| Sbjct 37246 GGCTCACGGATACCATCGATATCTACTGGAGGAGCTGCGATGAAGCCGATAATGAATACA 37305 Query 124942 TGCTGCTGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAACATAAATTCT 125001 | || ||||| | |||||| || ||||||| ||||| |||||||| | || | | Sbjct 37306 -GATGTAGCTGTTAATAAGCAAGGGATCATTAACACACCGAACCAACCGATGTATAAACG 37364 Query 125002 GTTGTTTGTTGATGTTACCCACTCACAGAA 125031 ||| | ||||| || | ||||||||| || Sbjct 37365 GTTTTCAGTTGAAGTGATCCACTCACAAAA 37394 Score = 720 bits (798), Expect = 0.0 Identities = 757/990 (76%), Gaps = 4/990 (0%) Strand=Plus/Minus Query 124044 CAGATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCA 124103 |||| |||| ||||| |||||||||||| || || | ||| ||||| ||||||||||| | Sbjct 109241 CAGAAGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATTACTTCCATACCTA 109182 Query 124104 AGTTTGCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCAACAA 124163 |||| || | ||| | | ||| |||| || | | || | | |||||||| Sbjct 109181 AGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGTGAATCAACAA 109122 Query 124164 CTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGG 124223 |||||||||| |||||||| || || |||||||||||||| || | | ||| | || | Sbjct 109121 CTGATTGGTTGAAGTTGAACCCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAG 109062 Query 124224 TTAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGT 124283 | ||||| | || | || || || | |||| ||||||||| | | ||||||| Sbjct 109061 TGAACCAAATGCAGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGT 109002 Query 124284 TGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGT 124343 ||||||| || || |||||||| | ||||||||||||||||||||| ||||| ||||||| Sbjct 109001 TGAATGATGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGT 108942 Query 124344 ATGTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTT 124403 | || ||||||||||| || || || ||||| | ||| || || | || || |||| Sbjct 108941 AAGTCTCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCAGATTCGTTTTCAGTAGTTT 108882 Query 124404 CTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGA 124463 | | ||||| || || || || | ||||| ||||| ||||||||||| || || || | Sbjct 108881 CACGGATTAATGATGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCACCAA 108822 Query 124464 ACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGA 124523 | | || || || ||| ||||||||| || ||||||| |||||| ||||| ||||||| Sbjct 108821 ATACACCAGCAACACCTAACATGTGGAATGGGTGCATTAAAATGTTGTGCTCAGCTTGGA 108762 Query 124524 AAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAAC 124583 | |||| ||| |||||||||||||| |||||||| | ||||||||||||||||| |||| Sbjct 108761 ATACGATCATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAAC 108702 Query 124584 CCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAG 124643 | || || | |||||| | ||||||||| || |||||||| |||||| ||||| |||| Sbjct 108701 CTTGTCCGATTGGGTAGATTAAGAATACTGCAGTTGCAGCAGCTACTGGAGCTGAGTAAG 108642 Query 124644 CAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGT 124703 |||||||||||||||||||||| ||||| | ||| || |||||||||| | ||||||| Sbjct 108641 CAACACAGATCCAAGGACGCATACCTAAACGGTAAGAAAGTTCCCACTCACGACCCATGT 108582 Query 124704 ATGCTGAAATACC-AATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATAC 124762 | | || || ||| |||||| |||||| ||| | || || ||||||||||| || || Sbjct 108581 AAGATGCAACACCTAATAAG-AAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTAT 108523 Query 124763 AACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTT 124822 ||||| || || | || || |||||||| |||||||||||||| || ||||| ||||| Sbjct 108522 AACCACTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTA 108463 Query 124823 GATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACT 124882 |||| || | || ||||||||||||||||||||||| ||||| |||||||| | ||| Sbjct 108462 GATGTAGGGATAATAGCACCAGAGATGATGTTGTTACCGTATAATAAAGAACCAGAAACT 108403 Query 124883 GGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAA-ACA 124941 || || | ||| || |||||||| || ||||| ||||| || || | | ||||| ||| Sbjct 108402 GGCTCACGGATACCATCGATATCTACTGGAGGAGCTGCGATGAAGCCGATAATGAATACA 108343 Query 124942 TGCTGCTGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAACATAAATTCT 125001 | || ||||| | |||||| || ||||||| ||||| |||||||| | || | | Sbjct 108342 -GATGTAGCTGTTAATAAGCAAGGGATCATTAACACACCGAACCAACCGATGTATAAACG 108284 Query 125002 GTTGTTTGTTGATGTTACCCACTCACAGAA 125031 ||| | ||||| || | ||||||||| || Sbjct 108283 GTTTTCAGTTGAAGTGATCCACTCACAAAA 108254 Score = 508 bits (562), Expect = 7e-139 Identities = 738/1043 (71%), Gaps = 21/1043 (2%) Strand=Plus/Minus Query 122865 TTTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTT 122924 |||| || |||||||| | ||||| ||||||||||||||||| || || || || | Sbjct 122719 TTTATAGAGCGTTACCACGAGGTAATACTTCTTCTGGGAATACTAAGCGTTCGTGTGGCT 122660 Query 122925 GGTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGA 122984 |||| | | |||||| || | || |||||||||||||||| ||| || || |||| Sbjct 122659 GGTCTTGTGCAGCCATCCAAGCACGGATACCTTCATTAAGAAGAAGGTTTTTAGTGTAGA 122600 Query 122985 AAGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTC 123044 |||| || || ||||| ||||| || || | |||||||| || || |||||||| || | Sbjct 122599 AAGTTTCAAATTCTGGATCTTCAGCAGCACGAATCTCTTGTGAAACGAAGTCGTAAGCAC 122540 Query 123045 TGAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAA 123104 | |||||| |||| |||||| | ||| |||| || |||| | ||| | ||||||| Sbjct 122539 GTAAGTTAAGAGCTAAACCTACAACACCAATAGCAGACATCCAAAGACCTGTCACAGGAA 122480 Query 123105 CGAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTG 123164 | || ||||||| ||||||||| | | |||||| ||||| || | |||||| || |||| Sbjct 122479 CAAATAACATAAAGAAGTGTAACCAACGTTTGTTTGAAAAAGCTACACCAAAAATTTGTG 122420 Query 123165 ACCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATG 123224 |||||||||| || ||||| | |||| ||||||||||| | || ||||| | |||| Sbjct 122419 ACCAGAATCTATTAGCTGTTACCATAGAGTAAGTTTCTTCAGCTTGCGTAGGGTTAAATG 122360 Query 123225 CTCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATG 123284 | | ||| || ||| ||| ||| || || || | | | | Sbjct 122359 CACGGAATGTGTTAGC---------ACCATCACCATCTTC-GA---------AAAGAGTA 122319 Query 123285 TGTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAA 123344 | |||| ||||| ||||||||||| ||||||| || || |||||| | || |||| Sbjct 122318 TTTTCT--ACTGTAGCACCATGAATAGCACATAATAGAGCCGCACCTAAAACACCAGCAA 122261 Query 123345 CACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATAT 123404 | ||||||||||| ||||| || | ||| ||||||||||||||| | |||||||||| Sbjct 122260 CTCCCATCATGTGGAATGGGTTAAGTGTCCAGTTGTGGAAACCTTGGAAGAATAAGATAA 122201 Query 123405 AACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTG 123464 |||| || || || || ||||| || || ||||||||||||| ||||||| | Sbjct 122200 AACGGAAAATAGCGGCAACACCAAAACTAGGGGCGAAGAACCAACCAGATTGACCTAAAG 122141 Query 123465 GATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGT 123524 | || || | ||| | | || || || || |||||||| || | |||||| | Sbjct 122140 GGTAAATTAAAAATACAGAAACAAATACAGCAATTGGTGCAGAGAAAGCAATTGCGTTAT 122081 Query 123525 AAGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTC 123584 | || | | | ||| | ||| || |||||||| | | ||| ||||| || | | Sbjct 122080 ATGGACGTAAGTTTACTGAACGTGCAATTTCAAATTGACGTAACATAAAACCAATTAAAC 122021 Query 123585 CAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGA 123644 |||| | ||||| | ||||||||| |||||| ||| || | ||| ||||||| | Sbjct 122020 CAAAAGCACCATGCAGTGCTACAAAAGTCCATAAACCACCTAATTGACACCAACGTGTAA 121961 Query 123645 ATGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAG 123704 | ||||| |||||||||||||||| || | | | |||| |||| || | | Sbjct 121960 AGTCACCTTGAGCTTCAGGTCCCCAAATAAATAATAAAGAATGAGCCATACTGTTTGCTG 121901 Query 123705 GTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCAT 123764 | || || ||||| || ||||||||||| || || | || |||| ||| | ||||| Sbjct 121900 GAGTCGAAACTGCAGCAGTTAAGAAGTTACAACCTTCTAAGTAAGAAGTTGCTAAACCAT 121841 Query 123765 GTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACG 123824 |||| ||||| || ||||| || || || || ||||||||||| | || | ||||| Sbjct 121840 GTGTGTACCAAGAAGTAACAAATGTTGTCCCAGTAAACCAACCACCTAATGCAAAATACG 121781 Query 123825 CACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAACC 123884 ||||||| | | | |||||| ||||| |||| || |||||||| ||| ||||| Sbjct 121780 CACAAGGTAATAAAAGAAGACCTGACCAACCTACAAAAACAAAACGGTCTTGACGTAACC 121721 Query 123885 AGTCGTCAAGAACATCAAACCAA 123907 |||| ||| | | ||||||||| Sbjct 121720 AGTCATCACAATCGTCAAACCAA 121698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578949764134400