Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq6720 782 0.0 >seq6720 Length=135362 Score = 782 bits (866), Expect = 0.0 Identities = 769/990 (78%), Gaps = 2/990 (0%) Strand=Plus/Plus Query 26729 CAGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAA 26788 ||| ||| | || ||||| || || || ||||| | |||||| || || || | || | Sbjct 36407 CAGAAGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATTACTTCCATACCTA 36466 Query 26789 GACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCA 26848 ||||||||||| | ||| ||||||||||| | |||||||| |||||||||| | Sbjct 36467 AGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGTGAATCAACAA 36526 Query 26849 CAGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGG 26908 | || || ||||||||||| ||||| | ||||| ||||| || |||| ||| | || | Sbjct 36527 CTGATTGGTTGAAGTTGAACCCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAG 36586 Query 26909 TGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGT 26968 ||||||| |||| | || ||||| ||||| | ||||||||| || ||||| ||||||| Sbjct 36587 TGAACCAAATGCAGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGT 36646 Query 26969 TGAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGT 27028 ||||||| || ||||||||||| |||||||| ||||| || ||||| || |||||||||| Sbjct 36647 TGAATGATGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGT 36706 Query 27029 AGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCT 27088 | ||||||||||||||||| || || ||||| | ||| || || ||||||| || | Sbjct 36707 AAGTCTCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCAGATTCGTTTTCAGTAGTTT 36766 Query 27089 CACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGA 27148 |||||| | ||| || || || | ||||||||||| ||||| | || ||||| | Sbjct 36767 CACGGATTAATGATGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCACCAA 36826 Query 27149 ATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGA 27208 |||| ||||||||||| | ||||||||| |||||||| | || ||||| || || |||| Sbjct 36827 ATACACCAGCAACACCTAACATGTGGAATGGGTGCATTAAAATGTTGTGCTCAGCTTGGA 36886 Query 27209 ATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAAC 27268 |||| | |||| |||| ||||||||||||||||| | ||||||| |||| |||||||||| Sbjct 36887 ATACGATCATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAAC 36946 Query 27269 CTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATG 27328 |||| |||| || |||| | |||||||||| | |||||||| |||||||| || || | Sbjct 36947 CTTGTCCGATTGGGTAGATTAAGAATACTGCAGTTGCAGCAGCTACTGGAGCTGAGTAAG 37006 Query 27329 CTACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATAT 27388 | ||||||||||| ||||||||||||||||| || || |||||||||||||| ||||| | Sbjct 37007 CAACACAGATCCAAGGACGCATACCTAAACGGTAAGAAAGTTCCCACTCACGACCCATGT 37066 Query 27389 AAGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACA 27448 ||| | || | | ||||||| | || | | |||| ||||||||||||| || | Sbjct 37067 AAGATGCAACACCTAATAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATA 37126 Query 27449 ACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTG 27508 ||||||| || | || || |||||||| |||||||||||||| ||||||||||| || | Sbjct 37127 ACCACTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTAG 37186 Query 27509 AACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGG 27568 | | |||| || |||||||| ||||||||||| || || | | ||||||| ||| | Sbjct 37187 ATGTAGGGATAATAGCACCAGAGATGATGTTGTTACCGTATAATAAAGAACCAGAAACTG 37246 Query 27569 GTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA-GCAG 27627 | ||||| ||||| || ||||| || || || ||||||||||| ||| |||||| ||| Sbjct 37247 GCTCACGGATACCATCGATATCTACTGGAGGAGCTGCGATGAAGCCGATAATGAATACAG 37306 Query 27628 ACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGG 27687 | || |||| ||| | |||||||| | |||||||||||||| | || |||||| Sbjct 37307 A-TGTAGCTGTTAATAAGCAAGGGATCATTAACACACCGAACCAACCGATGTATAAACGG 37365 Query 27688 TTGTTAGTTGATGTCACCCACTCACAGAAA 27717 || | |||||| || | ||||||||| ||| Sbjct 37366 TTTTCAGTTGAAGTGATCCACTCACAAAAA 37395 Score = 782 bits (866), Expect = 0.0 Identities = 769/990 (78%), Gaps = 2/990 (0%) Strand=Plus/Minus Query 26729 CAGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAA 26788 ||| ||| | || ||||| || || || ||||| | |||||| || || || | || | Sbjct 109241 CAGAAGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATTACTTCCATACCTA 109182 Query 26789 GACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCA 26848 ||||||||||| | ||| ||||||||||| | |||||||| |||||||||| | Sbjct 109181 AGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGTGAATCAACAA 109122 Query 26849 CAGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGG 26908 | || || ||||||||||| ||||| | ||||| ||||| || |||| ||| | || | Sbjct 109121 CTGATTGGTTGAAGTTGAACCCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAG 109062 Query 26909 TGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGT 26968 ||||||| |||| | || ||||| ||||| | ||||||||| || ||||| ||||||| Sbjct 109061 TGAACCAAATGCAGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGT 109002 Query 26969 TGAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGT 27028 ||||||| || ||||||||||| |||||||| ||||| || ||||| || |||||||||| Sbjct 109001 TGAATGATGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGT 108942 Query 27029 AGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCT 27088 | ||||||||||||||||| || || ||||| | ||| || || ||||||| || | Sbjct 108941 AAGTCTCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCAGATTCGTTTTCAGTAGTTT 108882 Query 27089 CACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGA 27148 |||||| | ||| || || || | ||||||||||| ||||| | || ||||| | Sbjct 108881 CACGGATTAATGATGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCACCAA 108822 Query 27149 ATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGA 27208 |||| ||||||||||| | ||||||||| |||||||| | || ||||| || || |||| Sbjct 108821 ATACACCAGCAACACCTAACATGTGGAATGGGTGCATTAAAATGTTGTGCTCAGCTTGGA 108762 Query 27209 ATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAAC 27268 |||| | |||| |||| ||||||||||||||||| | ||||||| |||| |||||||||| Sbjct 108761 ATACGATCATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAAC 108702 Query 27269 CTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATG 27328 |||| |||| || |||| | |||||||||| | |||||||| |||||||| || || | Sbjct 108701 CTTGTCCGATTGGGTAGATTAAGAATACTGCAGTTGCAGCAGCTACTGGAGCTGAGTAAG 108642 Query 27329 CTACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATAT 27388 | ||||||||||| ||||||||||||||||| || || |||||||||||||| ||||| | Sbjct 108641 CAACACAGATCCAAGGACGCATACCTAAACGGTAAGAAAGTTCCCACTCACGACCCATGT 108582 Query 27389 AAGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACA 27448 ||| | || | | ||||||| | || | | |||| ||||||||||||| || | Sbjct 108581 AAGATGCAACACCTAATAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATA 108522 Query 27449 ACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTG 27508 ||||||| || | || || |||||||| |||||||||||||| ||||||||||| || | Sbjct 108521 ACCACTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTAG 108462 Query 27509 AACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGG 27568 | | |||| || |||||||| ||||||||||| || || | | ||||||| ||| | Sbjct 108461 ATGTAGGGATAATAGCACCAGAGATGATGTTGTTACCGTATAATAAAGAACCAGAAACTG 108402 Query 27569 GTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA-GCAG 27627 | ||||| ||||| || ||||| || || || ||||||||||| ||| |||||| ||| Sbjct 108401 GCTCACGGATACCATCGATATCTACTGGAGGAGCTGCGATGAAGCCGATAATGAATACAG 108342 Query 27628 ACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGG 27687 | || |||| ||| | |||||||| | |||||||||||||| | || |||||| Sbjct 108341 A-TGTAGCTGTTAATAAGCAAGGGATCATTAACACACCGAACCAACCGATGTATAAACGG 108283 Query 27688 TTGTTAGTTGATGTCACCCACTCACAGAAA 27717 || | |||||| || | ||||||||| ||| Sbjct 108282 TTTTCAGTTGAAGTGATCCACTCACAAAAA 108253 Score = 502 bits (556), Expect = 3e-137 Identities = 698/974 (72%), Gaps = 4/974 (0%) Strand=Plus/Minus Query 23435 TTCGTGTGGTTGGTCAATAGT-CATC-ATCCATTCACGGAGGCCATTGTTCAACAAAATA 23492 ||||||||| ||||| | || || | ||||| |||||| || | || | | || Sbjct 122670 TTCGTGTGGCTGGTC--TTGTGCAGCCATCCAAGCACGGATACCTTCATTAAGAAGAAGG 122613 Query 23493 TTTTTCGTGTAGAAGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACA 23552 ||||| |||||||| || ||| | |||||||||||||||||||||||| || Sbjct 122612 TTTTTAGTGTAGAAAGTTTCAAATTCTGGATCTTCAGCAGCACGAATCTCTTGTGAAACG 122553 Query 23553 AAATCATAAGCACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGA 23612 || || |||||||| | |||||||| | || | | ||||||| ||| | ||||||| Sbjct 122552 AAGTCGTAAGCACGTAAGTTAAGAGCTAAACCTACAACACCAATAGCAGACATCCAAAGA 122493 Query 23613 CCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACC 23672 || | ||||||||||| |||||||||||||| |||||||| || || ||| || || Sbjct 122492 CCTGTCACAGGAACAAATAACATAAAGAAGTGTAACCAACGTTTGTTTGAAAAAGCTACA 122433 Query 23673 CCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGA 23732 || || ||||||||||| || | ||| ||||| ||||| || || || || || | || Sbjct 122432 CCAAAAATTTGTGACCAGAATCTATTAGCTGTTACCATAGAGTAAGTTTCTTCAGCTTGC 122373 Query 23733 GTGGAATCGAACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCG 23792 || | | || || || ||||| || || |||||||| | || ||||| || Sbjct 122372 GTAGGGTTAAATGCACGGAATGTGTTAGCACCATCACCATCTTCGAAAAGAGTATTTTCT 122313 Query 23793 ACAGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATC 23852 || ||| | |||||||||||| | | || || | || | | |||||||||||||||| Sbjct 122312 ACTGTAGCACCATGAATAGCACATAATAGAGCCGCACCTAAAACACCAGCAACTCCCATC 122253 Query 23853 ATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAA 23912 || ||||| ||||| || |||||||| || || || |||| ||| | | || | |||| Sbjct 122252 ATGTGGAATGGGTTAAGTGTCCAGTTGTGGAAACCTTGGAAGAATAAGATAAAACGGAAA 122193 Query 23913 ATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATG 23972 || || |||||||| ||||| || || ||||||||| || || || ||||| || || Sbjct 122192 ATAGCGGCAACACCAAAACTAGGGGCGAAGAACCAACCAGATTGACCTAAAGGGTAAATT 122133 Query 23973 AGGAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGG 24032 | |||||||| || ||||||||||| || |||| |||||||| || || || ||||| Sbjct 122132 AAAAATACAGAAACAAATACAGCAATTGGTGCAGAGAAAGCAATTGCGTTATATGGACGT 122073 Query 24033 ATTCCAATTAGACGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCA 24092 | | | |||||| | |||||| ||||||||||||||||| || | |||| ||| Sbjct 122072 AAGTTTACTGAACGTGCAATTTCAAATTGACGTAACATAAAACCAATTAAACCAAAAGCA 122013 Query 24093 CCGTGGAGAGCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCT 24152 || || || || ||||| | ||| | || || | ||| ||| ||| |||||| ||| Sbjct 122012 CCATGCAGTGCTACAAAAGTCCATAAACCACCTAATTGACACCAACGTGTAAAGTCACCT 121953 Query 24153 TGAGACTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAG 24212 |||| ||||| ||||||| | | | ||||||| ||||| || || || ||||| Sbjct 121952 TGAGCTTCAGGTCCCCAAATAAATAATAAAGAATGAGCCATACTGTTTGCTGGAGTCGAA 121893 Query 24213 ACAGCTGCCGTAAGAAAGTTAGCACCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTAC 24272 || || || || | |||||| ||| || | || ||| | || | ||||| |||||| Sbjct 121892 ACTGCAGCAGTTAAGAAGTTACAACCTTCTAAGTAAGAAGTTGCTAAACCATGTGTGTAC 121833 Query 24273 CAACTCGTAACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCAGTGGGA 24332 ||| |||||||| | ||| ||||||| |||||| || | |||| ||| ||| || Sbjct 121832 CAAGAAGTAACAAATGTTGTCCCAGTAAACCAACCACCTAATGCAAAATACGCACAAGGT 121773 Query 24333 AGAAGTAGGAGTCCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCAGTCGTCC 24392 | | || || || |||||||| ||||| ||||| || || | | |||||| || Sbjct 121772 AATAAAAGAAGACCTGACCAACCTACAAAAACAAAACGGTCTTGACGTAACCAGTCATCA 121713 Query 24393 AAGATGTCAAACCA 24406 | ||||||||| Sbjct 121712 CAATCGTCAAACCA 121699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665438498470400