Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq664 109 7e-19 seq6716 84.2 3e-11 >seq664 Length=23666 Score = 109 bits (120), Expect = 7e-19 Identities = 193/279 (69%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| || ||||||||||| ||| ||| | || ||||| | ||| ||| Sbjct 6383 CCTGGTACCGGCAAGACCCTCCTGGCCAAGGCCGTGGCTGGTGAGGCTGGCACCCCCTTC 6442 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| | ||| | | ||||||||| ||||||| || ||||| |||| | || Sbjct 6443 TTCTCCTGCGCCGCCTCTGAGTTTGTGGAGCTGTTTGTCGGCGTGGGCGCCAGCCGCGTG 6502 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 ||||| || ||||| | ||| | || ||| || || ||||||| || ||||| Sbjct 6503 CGCGACCTGTTTGAGAAGGCCAAGGCCAAGGCACCCTGCATCATCTTCATCGACGAGATC 6562 Query 175495 GATGCGGTGGGCAAGCAACGCAGC-GCTGGTGGTATGCCAGCAAATGACGAGAGAGAACA 175553 ||||| |||||| || ||| || || | | || | || || |||||| | || || Sbjct 6563 GATGCCGTGGGCCGCCAGCGCGGCAGCGGCATGGGTGGCGGC-AACGACGAGCGCGAGCA 6621 Query 175554 AACAATTAATCAACTACTCACCGAGATGGATGGCTTTGA 175592 || || || || || || || ||||||||||||||||| Sbjct 6622 GACGATCAACCAGCTGCTGACAGAGATGGATGGCTTTGA 6660 >seq6716 Length=19574 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 65062 TCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCC 65121 |||| | |||||||||||| ||| | || | || ||||||||| ||| |||| | Sbjct 5523 TCTCAGTGCTTCGCCGAGCGGCTTGTGGCCTACACGGCTGTGGAGGGCATCCTCTTTAGC 5464 Query 65122 GGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTC 65181 || |||||||| || | ||| | |||||||| || |||||||| ||||| |||| Sbjct 5463 GGCAGCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTC 5404 Query 65182 TCAAATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || || || || ||| || ||||| || ||| Sbjct 5403 TCCAACGAGCTCATCAGCCGTGACGAGGGCCTGCAC 5368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596519488153600