Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq6720 646 1e-180 >seq6720 Length=135362 Score = 646 bits (716), Expect = 1e-180 Identities = 718/952 (75%), Gaps = 8/952 (1%) Strand=Plus/Plus Query 7886 CAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTA 7945 |||| ||||||||||||||||||||||| || || | ||| ||||| ||||||||||||| Sbjct 36407 CAGAAGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATTACTTCCATACCTA 36466 Query 7946 AGTTTGCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAA 8005 |||| || | ||| | | |||| |||| || | | ||| | |||||||| Sbjct 36467 AGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGTGAATCAACAA 36526 Query 8006 CTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAG 8065 |||||||||| ||||| || ||||| | ||| |||||||| || | | ||| | || || Sbjct 36527 CTGATTGGTTGAAGTTGAACCCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAG 36586 Query 8066 TTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGT 8125 | ||||||| || | || || | | ||| | ||||||||| | | | ||||| Sbjct 36587 TGAACCAAATGCAGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGT 36646 Query 8126 TAAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTAT 8185 | || ||||| || ||||||||||| | ||||||||| || || ||||| || || || | Sbjct 36647 TGAATGATGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGT 36706 Query 8186 AGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCT 8245 | |||||||||||||||||||| || ||||| | ||| ||| || | |||||| || | Sbjct 36707 AAGTCTCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCAGATTCGTTTTCAGTAGTTT 36766 Query 8246 CTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGA 8305 | | ||||| || || || ||||| |||||||||||||| ||| | ||| ||||| | Sbjct 36767 CACGGATTAATGATGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCACCAA 36826 Query 8306 ACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGA 8365 | | ||| || || ||| ||| ||||| || ||||| | |||||| ||||| ||||||| Sbjct 36827 ATACACCAGCAACACCTAACATGTGGAATGGGTGCATTAAAATGTTGTGCTCAGCTTGGA 36886 Query 8366 ATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAAC 8425 |||||| ||||||||| || |||||||| ||||||| |||||| ||||||||||| |||| Sbjct 36887 ATACGATCATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAAC 36946 Query 8426 CCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATG 8485 | || || | ||| || | |||||| ||||| ||||||| ||||||||| || | Sbjct 36947 CTTGTCCGATTGGGTAGATTAAGAATACTGCAGTTGCAGCAGCTACTGGAGCTGAGTAAG 37006 Query 8486 CTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGT 8545 | ||||||||||| || | ||||||||| ||||| || | ||||||| | |||||||| Sbjct 37007 CAACACAGATCCAAGGACGCATACCTAAACGGTAAGAAAGTTCCCACTCACGACCCATGT 37066 Query 8546 AAGCAGAAATTCC-AATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATAC 8604 ||| | || || ||||| ||||||| | | | || || || ||||| ||||| || Sbjct 37067 AAGATGCAACACCTAATAA-GAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTAT 37125 Query 8605 AACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTG 8664 |||||||| ||||| | |||||||||||||| || |||||||| | || || ||||| Sbjct 37126 AACCACTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTA 37185 Query 8665 GAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACA 8724 || | || | | ||||||||||||||||||||| || || | || ||||| | ||| Sbjct 37186 GATGTAGGGATAATAGCACCAGAGATGATGTTGTTACCGTATAATAAAGAACCAGAAACT 37245 Query 8725 GGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCA- 8783 || ||||| ||||| |||||||| || || ||||| || || || || |||||| | | Sbjct 37246 GGCTCACGGATACCATCGATATCTACTGGAGGAGCTGCGATGAA-GC--CGATAATGAAT 37302 Query 8784 --AGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGA 8833 || | ||| | ||| |||||||| ||||||| || || |||||||||| Sbjct 37303 ACAGATGTAGCTGTTAATAAGCAAGGGATCATTAACACACCGAACCAACCGA 37354 Score = 646 bits (716), Expect = 1e-180 Identities = 718/952 (75%), Gaps = 8/952 (1%) Strand=Plus/Minus Query 7886 CAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTA 7945 |||| ||||||||||||||||||||||| || || | ||| ||||| ||||||||||||| Sbjct 109241 CAGAAGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATTACTTCCATACCTA 109182 Query 7946 AGTTTGCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAA 8005 |||| || | ||| | | |||| |||| || | | ||| | |||||||| Sbjct 109181 AGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGTGAATCAACAA 109122 Query 8006 CTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAG 8065 |||||||||| ||||| || ||||| | ||| |||||||| || | | ||| | || || Sbjct 109121 CTGATTGGTTGAAGTTGAACCCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAG 109062 Query 8066 TTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGT 8125 | ||||||| || | || || | | ||| | ||||||||| | | | ||||| Sbjct 109061 TGAACCAAATGCAGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGT 109002 Query 8126 TAAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTAT 8185 | || ||||| || ||||||||||| | ||||||||| || || ||||| || || || | Sbjct 109001 TGAATGATGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGT 108942 Query 8186 AGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCT 8245 | |||||||||||||||||||| || ||||| | ||| ||| || | |||||| || | Sbjct 108941 AAGTCTCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCAGATTCGTTTTCAGTAGTTT 108882 Query 8246 CTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGA 8305 | | ||||| || || || ||||| |||||||||||||| ||| | ||| ||||| | Sbjct 108881 CACGGATTAATGATGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCACCAA 108822 Query 8306 ACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGA 8365 | | ||| || || ||| ||| ||||| || ||||| | |||||| ||||| ||||||| Sbjct 108821 ATACACCAGCAACACCTAACATGTGGAATGGGTGCATTAAAATGTTGTGCTCAGCTTGGA 108762 Query 8366 ATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAAC 8425 |||||| ||||||||| || |||||||| ||||||| |||||| ||||||||||| |||| Sbjct 108761 ATACGATCATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAAC 108702 Query 8426 CCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATG 8485 | || || | ||| || | |||||| ||||| ||||||| ||||||||| || | Sbjct 108701 CTTGTCCGATTGGGTAGATTAAGAATACTGCAGTTGCAGCAGCTACTGGAGCTGAGTAAG 108642 Query 8486 CTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGT 8545 | ||||||||||| || | ||||||||| ||||| || | ||||||| | |||||||| Sbjct 108641 CAACACAGATCCAAGGACGCATACCTAAACGGTAAGAAAGTTCCCACTCACGACCCATGT 108582 Query 8546 AAGCAGAAATTCC-AATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATAC 8604 ||| | || || |||||| |||||| | | | || || || ||||| ||||| || Sbjct 108581 AAGATGCAACACCTAATAAG-AAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTAT 108523 Query 8605 AACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTG 8664 |||||||| ||||| | |||||||||||||| || |||||||| | || || ||||| Sbjct 108522 AACCACTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTA 108463 Query 8665 GAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACA 8724 || | || | | ||||||||||||||||||||| || || | || ||||| | ||| Sbjct 108462 GATGTAGGGATAATAGCACCAGAGATGATGTTGTTACCGTATAATAAAGAACCAGAAACT 108403 Query 8725 GGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCA- 8783 || ||||| ||||| |||||||| || || ||||| || || || || |||||| | | Sbjct 108402 GGCTCACGGATACCATCGATATCTACTGGAGGAGCTGCGATGAA-GC--CGATAATGAAT 108346 Query 8784 --AGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGA 8833 || | ||| | ||| |||||||| ||||||| || || |||||||||| Sbjct 108345 ACAGATGTAGCTGTTAATAAGCAAGGGATCATTAACACACCGAACCAACCGA 108294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615810667558400