Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq6720 728 0.0 >seq6720 Length=135362 Score = 728 bits (806), Expect = 0.0 Identities = 740/962 (77%), Gaps = 2/962 (0%) Strand=Plus/Minus Query 165796 AACCGTCTGTATGTCGGTTGGTTTGGTACGCTGATGATTCCAACTCTGTTGGCAGCAACT 165855 |||||| | || |||||||||| ||| | | ||||| || | || |||| || Sbjct 37367 AACCGTTTATACATCGGTTGGTTCGGTGTGTTAATGATCCCTTGCTTATTAACAGCTAC- 37309 Query 165856 ATCTGC-TTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGA 165914 ||||| ||||| ||| ||||||||| ||||| || || || ||||| || |||||||| Sbjct 37308 ATCTGTATTCATTATCGGCTTCATCGCAGCTCCTCCAGTAGATATCGATGGTATCCGTGA 37249 Query 165915 ACCCGTCGCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTC 165974 || || |||||||| | | || ||||||||||||||||||||||| || | || | Sbjct 37248 GCCAGTTTCTGGTTCTTTATTATACGGTAACAACATCATCTCTGGTGCTATTATCCCTAC 37189 Query 165975 TTCCAACGCAATTGGTCTACACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAATG 166034 || |||||||| ||||| |||||||| || || |||||||| || || | ||||| || Sbjct 37188 ATCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTG 37129 Query 166035 GCTCTATAACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTGATTGGCATCTATGC 166094 | | || ||||||||||||| |||| | | || | ||||||| | | || | | Sbjct 37128 GTTATACAACGGTGGTCCTTACCAATTAATCGTTTGCCACTTCTTATTAGGTGTTGCATC 37069 Query 166095 CTACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGT 166154 ||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||| Sbjct 37068 TTACATGGGTCGTGAGTGGGAACTTTCTTACCGTTTAGGTATGCGTCCTTGGATCTGTGT 37009 Query 166155 TGCTTACTCAGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTAGTATATCCTTTCGGTCA 166214 |||||||||||| ||||| |||||||| | |||||||||| || | || || |||| || Sbjct 37008 TGCTTACTCAGCTCCAGTAGCTGCTGCAACTGCAGTATTCTTAATCTACCCAATCGGACA 36949 Query 166215 AGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGT 166274 |||| ||||||||||| ||||| | || ||||| || || ||||||| |||| | || Sbjct 36948 AGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGATCGT 36889 Query 166275 CTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGT 166334 ||||||||||||||||| ||| | ||||| || ||||| ||| | || |||||||| || Sbjct 36888 ATTCCAAGCTGAGCACAACATTTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGT 36829 Query 166335 ATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAG 166394 ||||||||| || || ||||||||||| || || ||||| || | | | Sbjct 36828 ATTTGGTGGTTCATTATTCTCAGCTATGCACGGTTCATTAGTAACTTCATCATTAATCCG 36769 Query 166395 AGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAAC 166454 || || ||||||| |||||| ||| | |||||||| || || ||||||||||| || Sbjct 36768 TGAAACTACTGAAAACGAATCTGCTAACGAAGGTTACAAATTTGGTCAAGAAGAAGAGAC 36709 Query 166455 ATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATT 166514 |||||||||||||| || || |||||||| |||||||| |||||||||||||| ||||| Sbjct 36708 TTACAACATCGTAGCTGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCATCATT 36649 Query 166515 CAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTT 166574 ||||||||| || || || ||||||||| | ||||| ||||| || || |||| ||||| Sbjct 36648 CAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCGGTAATCTGCATTTGGTT 36589 Query 166575 CACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 166634 ||| || | || | || || |||||||||||| | ||||| |||||||||||||| || Sbjct 36588 CACTGCTTTAGGTTTATCAACTATGGCATTCAACTTAAACGGGTTCAACTTCAACCAATC 36529 Query 166635 CATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTTAACCGCGCTGG 166694 | ||||| || |||||||| || ||||| ||||| || | | ||||| ||| Sbjct 36528 AGTTGTTGATTCACAAGGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAA 36469 Query 166695 TCTCGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCCCTCGACCTCGCTGC 166754 | ||||||||||| ||||| || |||||||| ||||||||||| | ||| | ||| | Sbjct 36468 CTTAGGTATGGAAGTAATGCACGAACGTAACGCTCACAACTTCCCATTAGACTTAGCTTC 36409 Query 166755 TG 166756 || Sbjct 36408 TG 36407 Score = 728 bits (806), Expect = 0.0 Identities = 740/962 (77%), Gaps = 2/962 (0%) Strand=Plus/Plus Query 165796 AACCGTCTGTATGTCGGTTGGTTTGGTACGCTGATGATTCCAACTCTGTTGGCAGCAACT 165855 |||||| | || |||||||||| ||| | | ||||| || | || |||| || Sbjct 108281 AACCGTTTATACATCGGTTGGTTCGGTGTGTTAATGATCCCTTGCTTATTAACAGCTAC- 108339 Query 165856 ATCTGC-TTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGA 165914 ||||| ||||| ||| ||||||||| ||||| || || || ||||| || |||||||| Sbjct 108340 ATCTGTATTCATTATCGGCTTCATCGCAGCTCCTCCAGTAGATATCGATGGTATCCGTGA 108399 Query 165915 ACCCGTCGCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTC 165974 || || |||||||| | | || ||||||||||||||||||||||| || | || | Sbjct 108400 GCCAGTTTCTGGTTCTTTATTATACGGTAACAACATCATCTCTGGTGCTATTATCCCTAC 108459 Query 165975 TTCCAACGCAATTGGTCTACACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAATG 166034 || |||||||| ||||| |||||||| || || |||||||| || || | ||||| || Sbjct 108460 ATCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTG 108519 Query 166035 GCTCTATAACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTGATTGGCATCTATGC 166094 | | || ||||||||||||| |||| | | || | ||||||| | | || | | Sbjct 108520 GTTATACAACGGTGGTCCTTACCAATTAATCGTTTGCCACTTCTTATTAGGTGTTGCATC 108579 Query 166095 CTACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGT 166154 ||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||| Sbjct 108580 TTACATGGGTCGTGAGTGGGAACTTTCTTACCGTTTAGGTATGCGTCCTTGGATCTGTGT 108639 Query 166155 TGCTTACTCAGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTAGTATATCCTTTCGGTCA 166214 |||||||||||| ||||| |||||||| | |||||||||| || | || || |||| || Sbjct 108640 TGCTTACTCAGCTCCAGTAGCTGCTGCAACTGCAGTATTCTTAATCTACCCAATCGGACA 108699 Query 166215 AGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGT 166274 |||| ||||||||||| ||||| | || ||||| || || ||||||| |||| | || Sbjct 108700 AGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGATCGT 108759 Query 166275 CTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGT 166334 ||||||||||||||||| ||| | ||||| || ||||| ||| | || |||||||| || Sbjct 108760 ATTCCAAGCTGAGCACAACATTTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGT 108819 Query 166335 ATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAG 166394 ||||||||| || || ||||||||||| || || ||||| || | | | Sbjct 108820 ATTTGGTGGTTCATTATTCTCAGCTATGCACGGTTCATTAGTAACTTCATCATTAATCCG 108879 Query 166395 AGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAAC 166454 || || ||||||| |||||| ||| | |||||||| || || ||||||||||| || Sbjct 108880 TGAAACTACTGAAAACGAATCTGCTAACGAAGGTTACAAATTTGGTCAAGAAGAAGAGAC 108939 Query 166455 ATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATT 166514 |||||||||||||| || || |||||||| |||||||| |||||||||||||| ||||| Sbjct 108940 TTACAACATCGTAGCTGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCATCATT 108999 Query 166515 CAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTT 166574 ||||||||| || || || ||||||||| | ||||| ||||| || || |||| ||||| Sbjct 109000 CAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCGGTAATCTGCATTTGGTT 109059 Query 166575 CACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 166634 ||| || | || | || || |||||||||||| | ||||| |||||||||||||| || Sbjct 109060 CACTGCTTTAGGTTTATCAACTATGGCATTCAACTTAAACGGGTTCAACTTCAACCAATC 109119 Query 166635 CATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTTAACCGCGCTGG 166694 | ||||| || |||||||| || ||||| ||||| || | | ||||| ||| Sbjct 109120 AGTTGTTGATTCACAAGGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAA 109179 Query 166695 TCTCGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCCCTCGACCTCGCTGC 166754 | ||||||||||| ||||| || |||||||| ||||||||||| | ||| | ||| | Sbjct 109180 CTTAGGTATGGAAGTAATGCACGAACGTAACGCTCACAACTTCCCATTAGACTTAGCTTC 109239 Query 166755 TG 166756 || Sbjct 109240 TG 109241 Score = 520 bits (576), Expect = 1e-142 Identities = 711/992 (72%), Gaps = 8/992 (1%) Strand=Plus/Plus Query 167044 GATCGTTTTGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 167103 || |||||||||||||| || ||||| || |||||| | || || ||| ||| |||| Sbjct 121732 GACCGTTTTGTTTTTGTAGGTTGGTCAGGTCTTCTTTTATTACCTTGTGCGTATTTTGCA 121791 Query 167104 ATTGGCGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCG 167163 | || |||||| |||||||||| || || || || |||||| || ||||| | || Sbjct 121792 TTAGGTGGTTGGTTTACTGGGACAACATTTGTTACTTCTTGGTACACACATGGTTTAGCA 121851 Query 167164 TCCAGTTATCTTGAGGGTGCGAACTTTCTTACTGCGGCAGTTAGTACTCCAGCAGATTCT 167223 | ||| | || ||| ||||| | ||||| |||||| ||||||||| | | Sbjct 121852 ACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCAGTTTCGACTCCAGCAAACAGT 121911 Query 167224 ATGGGTCATTCTTTACTTCTTCTATGGGGTCCTGAATCTCAAGGGGATTTCGTCAGGTGG 167283 |||| |||||||||| | || | ||||| |||||| ||||||| || || | ||| Sbjct 121912 ATGGCTCATTCTTTATTATTTATTTGGGGACCTGAAGCTCAAGGTGACTTTACACGTTGG 121971 Query 167284 CTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGT 167343 ||| | || || | ||| ||||||| || || || || || |||| | | |||||| Sbjct 121972 TGTCAATTAGGTGGTTTATGGACTTTTGTAGCACTGCATGGTGCTTTTGGTTTAATTGGT 122031 Query 167344 TTCATGCTTCGACAGTTTGAACTTGCTCGCCTGATTGGTA----TCCGTCCCTACAATGC 167399 || ||| | || || |||||| |||| || | ||| | ||||| || || || Sbjct 122032 TTTATGTTACGTCAATTTGAAATTGCACGT----TCAGTAAACTTACGTCCATATAACGC 122087 Query 167400 TATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGCGTTTTCCTTCTCTATCCCCTCGG 167459 ||||||||||||| || |||||||| || ||| || || | | || || | || Sbjct 122088 AATTGCTTTCTCTGCACCAATTGCTGTATTTGTTTCTGTATTTTTAATTTACCCTTTAGG 122147 Query 167460 TCAAAGCAGCTGGTTCTTTGCCCCGTCCTTCGGAGTCGCCGCCATCTTCCGATTCCTCCT 167519 |||| | |||||||| ||||| || || || ||||| || ||||| || || | Sbjct 122148 TCAATCTGGTTGGTTCTTCGCCCCTAGTTTTGGTGTTGCCGCTATTTTCCGTTTTATCTT 122207 Query 167520 CTTCCTCCAAGGATTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGTAGCAGG 167579 ||| ||||||| ||||||||||||||||| || ||||| || |||||||| || || || Sbjct 122208 ATTCTTCCAAGGTTTCCACAACTGGACACTTAACCCATTCCACATGATGGGAGTTGCTGG 122267 Query 167580 TATCCTGGGTGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTTTGTA 167639 | | | |||| || | | | ||| || ||||||| ||||||||| |||||| | | Sbjct 122268 TGTTTTAGGTGCGGCTCTATTATGTGCTATTCATGGTGCTACAGTAGAAAATACTCTTTT 122327 Query 167640 TGAAGATGGTGAGCAAGCAAACACTTTTAAGGCATTCGATTCTACTCAGGAAGAAGAGAC 167699 ||||||||||| || ||||| || ||||| | |||| || | ||||| || Sbjct 122328 CGAAGATGGTGATGGTGCTAACACATTCCGTGCATTTAACCCTACGCAAGCTGAAGAAAC 122387 Query 167700 TTATTCAATGGTTACAGCAAACCGATTCTGGTCTCAGATCTTCGGCATTGCTTTCAGCAA 167759 ||| || ||||| ||||| || |||||||||| || || || || | ||||| || Sbjct 122388 TTACTCTATGGTAACAGCTAATAGATTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAA 122447 Query 167760 CAAACGCTGGCTTCATTTCTTTATGTTATTCGTTCCCGTTATGGGACTTTGGACATCATC 167819 |||||| ||| | || |||||||||||||| ||||| || | || ||||||| || | Sbjct 122448 CAAACGTTGGTTACACTTCTTTATGTTATTTGTTCCTGTGACAGGTCTTTGGATGTCTGC 122507 Query 167820 GATTGGCATCATTGGTCTGGCTCTTAATCTTCGTGCTTACGATTTCGTTTCTCAAGAGAT 167879 ||||| | | ||| | |||||||| | ||||||||||| |||||||| |||||||| Sbjct 122508 TATTGGTGTTGTAGGTTTAGCTCTTAACTTACGTGCTTACGACTTCGTTTCACAAGAGAT 122567 Query 167880 CAGAGCGGCGGAGGATCCAGAGTTTGAAACTTTCTATACTAAAAACATCCTTCTGAATGA 167939 | || || || |||||||| |||||||||||||| ||||||||| | ||||| ||||| Sbjct 122568 TCGTGCTGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAAACCTTCTTCTTAATGA 122627 Query 167940 AGGTCTTCGAGCATGGTTAGCACCTATCGATCAACCTCATGAGAACTTTGTGTTCCCAGA 167999 |||| | || || ||| | || | || || || || || ||| || |||||||| Sbjct 122628 AGGTATCCGTGCTTGGATGGCTGCACAAGACCAGCCACACGAACGCTTAGTATTCCCAGA 122687 Query 168000 GGAAGTTCTCCCACGAGGCAACGCACTATAAA 168031 ||||| | || || || ||||| ||||||| Sbjct 122688 AGAAGTATTACCTCGTGGTAACGCTCTATAAA 122719 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 18129 TCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAATC 18188 |||| ||||||||||||| ||||| ||| ||||||| |||| |||||||||||||| || Sbjct 122893 TCCTTAGTAGCTCAGCGGTAGAGCGGTCGGCTGTTAACCGATAGGTCGTAGGTTCAAGTC 122952 Query 18189 CTACCTGGGGAG 18200 |||||||||||| Sbjct 122953 CTACCTGGGGAG 122964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561200855168000