Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq2272 89.7 7e-13 seq4697 86.0 8e-12 seq1067 84.2 3e-11 >seq2272 Length=9786 Score = 89.7 bits (98), Expect = 7e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| |||||||| || ||||| || || || || |||||||| |||||||||| Sbjct 6255 GTGGTATGCAGATCTTTGTCAAGACCCTCACAGGCAAGACCATCACCCTGGAGGTTGAGT 6196 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 | ||||| || || ||| |||| ||||||| || || ||||| || Sbjct 6195 CTAGCGACACCATTGAGAACGTCAAGTCCAAGATCCAGGACAAGGAGGG 6147 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||| || ||||| || || || || |||||||| ||||||||||| Sbjct 5751 ATGCAGATCTTTGTCAAGACCCTCACAGGCAAGACCATCACCCTGGAGGTTGAGTCTAGC 5692 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| || || ||| |||| ||||||| || || ||||| || Sbjct 5691 GACACCATTGAGAACGTCAAGTCCAAGATCCAGGACAAGGAGGG 5648 >seq4697 Length=4465 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 199215 AAGAAGGAGCTTGTGGCCTACCATGAGGCGGGGCACGCCATTGTCGGTGTTCTCGTACCA 199274 |||||| |||| ||||||||||| ||||| || ||||| | ||||| | ||| | || Sbjct 2639 AAGAAGAAGCTCGTGGCCTACCACGAGGCCGGCCACGCGCTGGTCGGGGCCCTCATGCCC 2698 Query 199275 GATTATGACACGGTTCGTAAGGTTTCTATCATGCCCCGGGGTGCTGCGGGTGGTGTGACC 199334 || || ||| | || ||| | || ||| ||||||| || || || || ||| ||||| Sbjct 2699 GACTACGACCCCGTGACCAAGATCTCCATCGTGCCCCGTGGGGCCGCCGGCGGTCTGACC 2758 Query 199335 TTCTTCCAACCCTCTGAGGA 199354 |||||| || || ||||| Sbjct 2759 TTCTTCGCGCCGTCGGAGGA 2778 >seq1067 Length=17102 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||||||||| || ||||| ||||| || || |||||||| ||||| ||||| Sbjct 10744 ATGCAAATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGTCCAGT 10803 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| || || || |||| ||||||| || || ||||| || Sbjct 10804 GACACCATTGAGAATGTCAAGTCCAAGATCCAGGACAAGGAGGG 10847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657807139558400