Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq6720 558 1e-154 >seq6720 Length=135362 Score = 558 bits (618), Expect = 1e-154 Identities = 719/992 (72%), Gaps = 0/992 (0%) Strand=Plus/Minus Query 41234 TTTTGTTCCTGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTT 41293 |||||| ||| |||| || ||| | |||||| | || | || |||||||| || | Sbjct 37394 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 37335 Query 41294 ATGATTCCGTGCCTCCTTGCCGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACCA 41353 ||||| || ||| | | | |||||| || || ||||||| ||| | | || || Sbjct 37334 ATGATCCCTTGCTTATTAACAGCTACATCTGTATTCATTATCGGCTTCATCGCAGCTCCT 37275 Query 41354 CCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAAC 41413 || || || |||||||| ||||| || || || |||| || | || || ||||||||| Sbjct 37274 CCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAAC 37215 Query 41414 ATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATT 41473 ||||| || || || | | || | ||| || ||||| || ||||||||||||||| Sbjct 37214 ATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAATT 37155 Query 41474 TGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTA 41533 |||||||||||| | | || || ||| | |||||||| ||||| | |||| | | ||| Sbjct 37154 TGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTT 37095 Query 41534 TTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGA 41593 | ||||||| | | || || |||||||||| || |||||||||||| || || Sbjct 37094 TGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGT 37035 Query 41594 CTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCT 41653 |||| ||| | || ||||||| |||||| ||||| ||||| || || ||||| ||||| Sbjct 37034 TTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGCA 36975 Query 41654 GTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATA 41713 || ||| | | || || | ||||| || ||||| ||||||| |||||| || || || Sbjct 36974 GTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATC 36915 Query 41714 TCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCT 41773 || || || ||||||| |||| | || ||||| ||||||||||| ||| | ||||| || Sbjct 36914 TCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCCA 36855 Query 41774 TTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGT 41833 || |||||| | ||||| || || ||||||||||| || ||||| |||||||||||| Sbjct 36854 TTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGGT 36795 Query 41834 AGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGT 41893 | || || || ||| | || ||||| || |||||| | | || ||| | ||| Sbjct 36794 TCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGGT 36735 Query 41894 TACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGT 41953 ||||| ||||||||||| |||||||||||||| || || ||||| ||||| || |||||| Sbjct 36734 TACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGGT 36675 Query 41954 CGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCT 42013 || | ||||||||||| || || || || || ||| | || ||||| | ||| Sbjct 36674 CGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGCT 36615 Query 42014 GCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAAC 42073 || ||||| || | | |||||||| |||| | || | || || ||||| |||||| Sbjct 36614 GCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCAAC 36555 Query 42074 TTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACC 42133 || || || |||||||| |||||||| | | | | | | || | || | ||||| Sbjct 36554 TTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACACT 36495 Query 42134 TGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCA 42193 ||||||||||| | |||||||| ||| | || | || || ||||| || || ||||| Sbjct 36494 TGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGCT 36435 Query 42194 CACAACTTCCCGCTTGACCTTGCATCCGTGGA 42225 ||||||||||| | ||| | || || || || Sbjct 36434 CACAACTTCCCATTAGACTTAGCTTCTGTAGA 36403 Score = 558 bits (618), Expect = 1e-154 Identities = 719/992 (72%), Gaps = 0/992 (0%) Strand=Plus/Plus Query 41234 TTTTGTTCCTGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTT 41293 |||||| ||| |||| || ||| | |||||| | || | || |||||||| || | Sbjct 108254 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 108313 Query 41294 ATGATTCCGTGCCTCCTTGCCGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACCA 41353 ||||| || ||| | | | |||||| || || ||||||| ||| | | || || Sbjct 108314 ATGATCCCTTGCTTATTAACAGCTACATCTGTATTCATTATCGGCTTCATCGCAGCTCCT 108373 Query 41354 CCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAAC 41413 || || || |||||||| ||||| || || || |||| || | || || ||||||||| Sbjct 108374 CCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAAC 108433 Query 41414 ATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATT 41473 ||||| || || || | | || | ||| || ||||| || ||||||||||||||| Sbjct 108434 ATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAATT 108493 Query 41474 TGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTA 41533 |||||||||||| | | || || ||| | |||||||| ||||| | |||| | | ||| Sbjct 108494 TGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTT 108553 Query 41534 TTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGA 41593 | ||||||| | | || || |||||||||| || |||||||||||| || || Sbjct 108554 TGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGT 108613 Query 41594 CTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCT 41653 |||| ||| | || ||||||| |||||| ||||| ||||| || || ||||| ||||| Sbjct 108614 TTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGCA 108673 Query 41654 GTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATA 41713 || ||| | | || || | ||||| || ||||| ||||||| |||||| || || || Sbjct 108674 GTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATC 108733 Query 41714 TCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCT 41773 || || || ||||||| |||| | || ||||| ||||||||||| ||| | ||||| || Sbjct 108734 TCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCCA 108793 Query 41774 TTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGT 41833 || |||||| | ||||| || || ||||||||||| || ||||| |||||||||||| Sbjct 108794 TTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGGT 108853 Query 41834 AGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGT 41893 | || || || ||| | || ||||| || |||||| | | || ||| | ||| Sbjct 108854 TCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGGT 108913 Query 41894 TACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGT 41953 ||||| ||||||||||| |||||||||||||| || || ||||| ||||| || |||||| Sbjct 108914 TACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGGT 108973 Query 41954 CGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCT 42013 || | ||||||||||| || || || || || ||| | || ||||| | ||| Sbjct 108974 CGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGCT 109033 Query 42014 GCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAAC 42073 || ||||| || | | |||||||| |||| | || | || || ||||| |||||| Sbjct 109034 GCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCAAC 109093 Query 42074 TTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACC 42133 || || || |||||||| |||||||| | | | | | | || | || | ||||| Sbjct 109094 TTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACACT 109153 Query 42134 TGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCA 42193 ||||||||||| | |||||||| ||| | || | || || ||||| || || ||||| Sbjct 109154 TGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGCT 109213 Query 42194 CACAACTTCCCGCTTGACCTTGCATCCGTGGA 42225 ||||||||||| | ||| | || || || || Sbjct 109214 CACAACTTCCCATTAGACTTAGCTTCTGTAGA 109245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146202732090880