Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq6720 583 3e-162 >seq6720 Length=135362 Score = 583 bits (646), Expect = 3e-162 Identities = 722/983 (73%), Gaps = 6/983 (1%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || |||||| | ||| | ||||| ||| | |||||| | || | || ||||| Sbjct 37403 TGGGCTCGTTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTC 37344 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGTTTT-ATTGTCGCTTTCAT 42398 |||||| | ||||| || || | | | ||||| | |||| || ||| ||| ||||| Sbjct 37343 GGTGTGTTAATGATCCCTTGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCAT 37285 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 || || ||||| ||||| || ||||| || ||||| || || ||||| ||| | | || Sbjct 37284 CGCAGCTCCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATA 37225 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 || |||||||||||||||||||| | | |||| ||||||||| || || || || Sbjct 37224 CGGTAACAACATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTT 37165 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 || | || |||||||| | | | ||||| ||| | ||||| || || ||||| || Sbjct 37164 CTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCA 37105 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 | |||| | ||||||| | | ||| | |||||| |||| || || |||||||| Sbjct 37104 ATTAATCGTTTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACT 37045 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698 ||| ||||| | || ||| | || ||||||| |||||||||||| || || || ||||| Sbjct 37044 TTCTTACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGC 36985 Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCC 42758 || |||||||| ||| | |||| ||| | || ||||||||||| || ||||| ||||| Sbjct 36984 TGCAACTGCAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCC 36925 Query 42759 TCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCT 42818 | | || || || ||||| |||||||||||| | || ||||| ||||| || |||||| | Sbjct 36924 TTTAGGTATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTT 36865 Query 42819 TATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGC 42878 ||||| || ||||| ||| | |||||||| || ||||||||||| || || |||||||| Sbjct 36864 AATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGC 36805 Query 42879 TATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCA 42938 |||||| ||| | || || || || | | |||||||| |||||||||||| Sbjct 36804 TATGCACGGTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGC 36745 Query 42939 AAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGG 42998 || | || ||||| || |||||||| || |||||||| ||||| || || || || || Sbjct 36744 TAACGAAGGTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGG 36685 Query 42999 TTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCACTT 43058 ||||||||| || | ||||||||||| || || || || || ||| || || ||||| Sbjct 36684 TTACTTTGGTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTT 36625 Query 43059 CTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTAT 43118 ||| | || |||||||| || | | |||||||||||| || | || | ||||| Sbjct 36624 CTTCTTAGCTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTAT 36565 Query 43119 GGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAA--TCAT 43176 ||| || ||||| || || || ||||| ||||||||| |||||||| ||| || || | Sbjct 36564 GGCATTCAACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGAT--TCACAAGGTCGT 36507 Query 43177 GTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCAC 43236 || | ||||||||||| || | || ||||| ||| | || | || || |||||| Sbjct 36506 GTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCAC 36447 Query 43237 GAGCGGAATGCACATAACTTCCC 43259 || || || || || |||||||| Sbjct 36446 GAACGTAACGCTCACAACTTCCC 36424 Score = 583 bits (646), Expect = 3e-162 Identities = 722/983 (73%), Gaps = 6/983 (1%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || |||||| | ||| | ||||| ||| | |||||| | || | || ||||| Sbjct 108245 TGGGCTCGTTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTC 108304 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGTTTT-ATTGTCGCTTTCAT 42398 |||||| | ||||| || || | | | ||||| | |||| || ||| ||| ||||| Sbjct 108305 GGTGTGTTAATGATCCCTTGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCAT 108363 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 || || ||||| ||||| || ||||| || ||||| || || ||||| ||| | | || Sbjct 108364 CGCAGCTCCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATA 108423 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 || |||||||||||||||||||| | | |||| ||||||||| || || || || Sbjct 108424 CGGTAACAACATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTT 108483 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 || | || |||||||| | | | ||||| ||| | ||||| || || ||||| || Sbjct 108484 CTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCA 108543 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 | |||| | ||||||| | | ||| | |||||| |||| || || |||||||| Sbjct 108544 ATTAATCGTTTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACT 108603 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698 ||| ||||| | || ||| | || ||||||| |||||||||||| || || || ||||| Sbjct 108604 TTCTTACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGC 108663 Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCC 42758 || |||||||| ||| | |||| ||| | || ||||||||||| || ||||| ||||| Sbjct 108664 TGCAACTGCAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCC 108723 Query 42759 TCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCT 42818 | | || || || ||||| |||||||||||| | || ||||| ||||| || |||||| | Sbjct 108724 TTTAGGTATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTT 108783 Query 42819 TATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGC 42878 ||||| || ||||| ||| | |||||||| || ||||||||||| || || |||||||| Sbjct 108784 AATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGC 108843 Query 42879 TATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCA 42938 |||||| ||| | || || || || | | |||||||| |||||||||||| Sbjct 108844 TATGCACGGTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGC 108903 Query 42939 AAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGG 42998 || | || ||||| || |||||||| || |||||||| ||||| || || || || || Sbjct 108904 TAACGAAGGTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGG 108963 Query 42999 TTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCACTT 43058 ||||||||| || | ||||||||||| || || || || || ||| || || ||||| Sbjct 108964 TTACTTTGGTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTT 109023 Query 43059 CTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTAT 43118 ||| | || |||||||| || | | |||||||||||| || | || | ||||| Sbjct 109024 CTTCTTAGCTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTAT 109083 Query 43119 GGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAA--TCAT 43176 ||| || ||||| || || || ||||| ||||||||| |||||||| ||| || || | Sbjct 109084 GGCATTCAACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGAT--TCACAAGGTCGT 109141 Query 43177 GTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCAC 43236 || | ||||||||||| || | || ||||| ||| | || | || || |||||| Sbjct 109142 GTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCAC 109201 Query 43237 GAGCGGAATGCACATAACTTCCC 43259 || || || || || |||||||| Sbjct 109202 GAACGTAACGCTCACAACTTCCC 109224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143521346082560