Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq6720 538 1e-148 >seq6720 Length=135362 Score = 538 bits (596), Expect = 1e-148 Identities = 713/987 (72%), Gaps = 2/987 (0%) Strand=Plus/Plus Query 25874 GATGCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGG 25933 || |||||||| | ||| ||||| ||||| ||||| |||||||| ||||| | || | | Sbjct 36409 GAAGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATTACTTCCATACCTAAG 36468 Query 25934 TTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACT 25993 ||||| ||||| | | |||||||| || || || || | ||| || ||| Sbjct 36469 TTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGTGAATCAACAACT 36528 Query 25994 GACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTC 26053 || ||||| ||||| || || |||| ||| |||||||| || | | ||| | || || Sbjct 36529 GATTGGTTGAAGTTGAACCCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAGTG 36588 Query 26054 AGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTA 26113 | ||| |||| | |||||||||| ||| | ||||| || | ||||| ||| || Sbjct 36589 AACCAAATGCAGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTG 36648 Query 26114 AAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATAT 26173 || || || || || ||||| | |||||||| ||||||||||| || || || || Sbjct 36649 AATGATGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGTAA 36708 Query 26174 GTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCT 26233 |||||||| ||||| ||||| || || || | || || | | || || ||||| Sbjct 36709 GTCTCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCAGATTCGTTTTCAGTAGTTTCA 36768 Query 26234 GCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAA 26293 || | ||| ||||| || || ||||||||||| | ||| | | ||||| || Sbjct 36769 CGGATTAATGATGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCACCAAAT 36828 Query 26294 ACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAAT 26353 || ||||||||||| ||| |||||||||||||| | || || || || ||||||||| Sbjct 36829 ACACCAGCAACACCTAACATGTGGAATGGGTGCATTAAAATGTTGTGCTCAGCTTGGAAT 36888 Query 26354 ACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCT 26413 |||| ||| ||||| ||||||||||||||||| | |||||| |||||| ||| ||| Sbjct 36889 ACGATCATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAACCT 36948 Query 26414 TGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCA 26473 ||||||| || || | |||||| ||||| || || | || ||| |||| || ||| Sbjct 36949 TGTCCGATTGGGTAGATTAAGAATACTGCAGTTGCAGCAGCTACTGGAGCTGAGTAAGCA 37008 Query 26474 ACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATAT 26533 ||| | ||||| || | ||| |||| | |||||| |||||||||| | || || Sbjct 37009 ACACAGATCCAAGGACGCATACCTAAACGGTAAGAAAGTTCCCACTCACGACCCATGTAA 37068 Query 26534 GCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGC 26593 | ||| || |||| |||||||||| | | || | ||| || || || || ||||||| | Sbjct 37069 GATGCAACACCTAATAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATAAC 37128 Query 26594 CACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAG 26653 |||||||| | | |||||||||| || ||||| || || || |||||||||||||| Sbjct 37129 CACTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTAGAT 37188 Query 26654 GAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGC 26713 | |||| | || || || || || ||||| ||||| | ||| || || ||||||||| Sbjct 37189 GTAGGGATAATAGCACCAGAGATGATGTTGTTACCGTATAATAAAGAACCAGAAACTGGC 37248 Query 26714 TCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTAT-AAAACATGT 26772 ||||| || ||||| |||||||| || || |||||||||||| | | || || ||| | Sbjct 37249 TCACGGATACCATCGATATCTACTGGAGGAGCTGCGATGAAGCCGATAATGAATACA-GA 37307 Query 26773 AGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTT 26832 || |||| | |||||| || ||||| | ||| |||||||| || | || | |||||| Sbjct 37308 TGTAGCTGTTAATAAGCAAGGGATCATTAACACACCGAACCAACCGATGTATAAACGGTT 37367 Query 26833 CTCAGTACTTGTAACCCACTCACAAAA 26859 ||||| || | |||||||||||| Sbjct 37368 TTCAGTTGAAGTGATCCACTCACAAAA 37394 Score = 538 bits (596), Expect = 1e-148 Identities = 713/987 (72%), Gaps = 2/987 (0%) Strand=Plus/Minus Query 25874 GATGCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGG 25933 || |||||||| | ||| ||||| ||||| ||||| |||||||| ||||| | || | | Sbjct 109239 GAAGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATTACTTCCATACCTAAG 109180 Query 25934 TTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACT 25993 ||||| ||||| | | |||||||| || || || || | ||| || ||| Sbjct 109179 TTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGTGAATCAACAACT 109120 Query 25994 GACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTC 26053 || ||||| ||||| || || |||| ||| |||||||| || | | ||| | || || Sbjct 109119 GATTGGTTGAAGTTGAACCCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAGTG 109060 Query 26054 AGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTA 26113 | ||| |||| | |||||||||| ||| | ||||| || | ||||| ||| || Sbjct 109059 AACCAAATGCAGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTG 109000 Query 26114 AAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATAT 26173 || || || || || ||||| | |||||||| ||||||||||| || || || || Sbjct 108999 AATGATGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGTAA 108940 Query 26174 GTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCT 26233 |||||||| ||||| ||||| || || || | || || | | || || ||||| Sbjct 108939 GTCTCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCAGATTCGTTTTCAGTAGTTTCA 108880 Query 26234 GCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAA 26293 || | ||| ||||| || || ||||||||||| | ||| | | ||||| || Sbjct 108879 CGGATTAATGATGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCACCAAAT 108820 Query 26294 ACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAAT 26353 || ||||||||||| ||| |||||||||||||| | || || || || ||||||||| Sbjct 108819 ACACCAGCAACACCTAACATGTGGAATGGGTGCATTAAAATGTTGTGCTCAGCTTGGAAT 108760 Query 26354 ACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCT 26413 |||| ||| ||||| ||||||||||||||||| | |||||| |||||| ||| ||| Sbjct 108759 ACGATCATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAACCT 108700 Query 26414 TGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCA 26473 ||||||| || || | |||||| ||||| || || | || ||| |||| || ||| Sbjct 108699 TGTCCGATTGGGTAGATTAAGAATACTGCAGTTGCAGCAGCTACTGGAGCTGAGTAAGCA 108640 Query 26474 ACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATAT 26533 ||| | ||||| || | ||| |||| | |||||| |||||||||| | || || Sbjct 108639 ACACAGATCCAAGGACGCATACCTAAACGGTAAGAAAGTTCCCACTCACGACCCATGTAA 108580 Query 26534 GCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGC 26593 | ||| || |||| |||||||||| | | || | ||| || || || || ||||||| | Sbjct 108579 GATGCAACACCTAATAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATAAC 108520 Query 26594 CACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAG 26653 |||||||| | | |||||||||| || ||||| || || || |||||||||||||| Sbjct 108519 CACTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTAGAT 108460 Query 26654 GAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGC 26713 | |||| | || || || || || ||||| ||||| | ||| || || ||||||||| Sbjct 108459 GTAGGGATAATAGCACCAGAGATGATGTTGTTACCGTATAATAAAGAACCAGAAACTGGC 108400 Query 26714 TCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGT 26772 ||||| || ||||| |||||||| || || |||||||||||| | | || || ||| | Sbjct 108399 TCACGGATACCATCGATATCTACTGGAGGAGCTGCGATGAAGCCGATAATGAATACAGAT 108340 Query 26773 AGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTT 26832 || |||| | |||||| || ||||| | ||| |||||||| || | || | |||||| Sbjct 108339 -GTAGCTGTTAATAAGCAAGGGATCATTAACACACCGAACCAACCGATGTATAAACGGTT 108281 Query 26833 CTCAGTACTTGTAACCCACTCACAAAA 26859 ||||| || | |||||||||||| Sbjct 108280 TTCAGTTGAAGTGATCCACTCACAAAA 108254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147700212582400