Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq6720 774 0.0 >seq6720 Length=135362 Score = 774 bits (858), Expect = 0.0 Identities = 764/984 (78%), Gaps = 6/984 (1%) Strand=Plus/Minus Query 154976 AGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCC 155035 ||||| | ||||| |||| ||||| | || |||||||||||||||| | ||||||| Sbjct 37387 AGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTAATGATCC 37328 Query 155036 CTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAG 155095 ||||| | | | ||| | | |||||| ||| |||||| || || ||||| |||| Sbjct 37327 CTTGCTTATTAACAGCTACATCTGTATTCATTATCGGCTTCATCGCAGCTCCTCCAGTAG 37268 Query 155096 ACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCT 155155 | || |||||||| ||||| || || ||||||||||| | || |||||||||||||||| Sbjct 37267 ATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAACATCATCT 37208 Query 155156 CTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAG 155215 |||||||| || |||||| || |||||||| ||||| |||||||| || |||||||||| Sbjct 37207 CTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAG 37148 Query 155216 CAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACT 155275 | || || | || |||||||| ||||| |||||||||| |||| | | || | ||||| Sbjct 37147 CTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTGCCACT 37088 Query 155276 TCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCA 155335 || | | || | || | ||| |||||| |||||||||||||||||||| | || | Sbjct 37087 TCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTTTAGGTA 37028 Query 155336 TGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCC 155395 |||||||||||||||||||||| ||||| || |||||| ||||||| || |||||| Sbjct 37027 TGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGCAGTATTCT 36968 Query 155396 TTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTA 155455 | | || || |||| ||||||||||||||||||| |||||| | ||||||||||||| Sbjct 36967 TAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTA 36908 Query 155456 CTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACA 155515 |||| |||| ||| |||| |||||||| || ||||| || | |||||||| ||||||| Sbjct 36907 CTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCCATTCCACA 36848 Query 155516 TGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGG 155575 || | || || || ||||| || ||||| || | ||||| ||||||||||||||||| | Sbjct 36847 TGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGGTTCATTAG 36788 Query 155576 TGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGT 155635 | || || ||| ||||||||||||||||||| | || ||| ||| | |||||||| | Sbjct 36787 TAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGGTTACAAAT 36728 Query 155636 TCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTA 155695 | || ||||||||||| ||||| ||||| || ||||| || || ||||| |||||| | | Sbjct 36727 TTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGGTCGTTTAA 36668 Query 155696 TCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGC 155755 ||||||| || ||||| ||||||||||| | | ||||||||| | ||||| |||| Sbjct 36667 TCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGC 36608 Query 155756 CTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACG 155815 | || ||||||| ||| |||||| | ||| | ||||| |||||||||||| | |||| Sbjct 36607 CGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCAACTTAAACG 36548 Query 155816 GTTTCAACTTCAACCAGTCTGTAGTAGA--CGCTA-GTGGTAAAGTCATCCCTACATGGG 155872 | |||||||||||||| || || || || | | | || || | | | | || |||| Sbjct 36547 GGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAAC---ACTTGGG 36491 Query 155873 CAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACA 155932 | ||||| | ||||| ||| | |||||||||||||||||||| ||||||||||||| Sbjct 36490 CTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGCTCACA 36431 Query 155933 ACTTCCCTCTTGACCTTGCTGCTG 155956 ||||||| | ||| | ||| ||| Sbjct 36430 ACTTCCCATTAGACTTAGCTTCTG 36407 Score = 774 bits (858), Expect = 0.0 Identities = 764/984 (78%), Gaps = 6/984 (1%) Strand=Plus/Plus Query 154976 AGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCC 155035 ||||| | ||||| |||| ||||| | || |||||||||||||||| | ||||||| Sbjct 108261 AGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTAATGATCC 108320 Query 155036 CTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAG 155095 ||||| | | | ||| | | |||||| ||| |||||| || || ||||| |||| Sbjct 108321 CTTGCTTATTAACAGCTACATCTGTATTCATTATCGGCTTCATCGCAGCTCCTCCAGTAG 108380 Query 155096 ACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCT 155155 | || |||||||| ||||| || || ||||||||||| | || |||||||||||||||| Sbjct 108381 ATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAACATCATCT 108440 Query 155156 CTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAG 155215 |||||||| || |||||| || |||||||| ||||| |||||||| || |||||||||| Sbjct 108441 CTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAG 108500 Query 155216 CAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACT 155275 | || || | || |||||||| ||||| |||||||||| |||| | | || | ||||| Sbjct 108501 CTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTGCCACT 108560 Query 155276 TCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCA 155335 || | | || | || | ||| |||||| |||||||||||||||||||| | || | Sbjct 108561 TCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTTTAGGTA 108620 Query 155336 TGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCC 155395 |||||||||||||||||||||| ||||| || |||||| ||||||| || |||||| Sbjct 108621 TGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGCAGTATTCT 108680 Query 155396 TTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTA 155455 | | || || |||| ||||||||||||||||||| |||||| | ||||||||||||| Sbjct 108681 TAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTA 108740 Query 155456 CTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACA 155515 |||| |||| ||| |||| |||||||| || ||||| || | |||||||| ||||||| Sbjct 108741 CTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCCATTCCACA 108800 Query 155516 TGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGG 155575 || | || || || ||||| || ||||| || | ||||| ||||||||||||||||| | Sbjct 108801 TGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGGTTCATTAG 108860 Query 155576 TGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGT 155635 | || || ||| ||||||||||||||||||| | || ||| ||| | |||||||| | Sbjct 108861 TAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGGTTACAAAT 108920 Query 155636 TCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTA 155695 | || ||||||||||| ||||| ||||| || ||||| || || ||||| |||||| | | Sbjct 108921 TTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGGTCGTTTAA 108980 Query 155696 TCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGC 155755 ||||||| || ||||| ||||||||||| | | ||||||||| | ||||| |||| Sbjct 108981 TCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGC 109040 Query 155756 CTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACG 155815 | || ||||||| ||| |||||| | ||| | ||||| |||||||||||| | |||| Sbjct 109041 CGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCAACTTAAACG 109100 Query 155816 GTTTCAACTTCAACCAGTCTGTAGTAGA--CGCTA-GTGGTAAAGTCATCCCTACATGGG 155872 | |||||||||||||| || || || || | | | || || | | | | || |||| Sbjct 109101 GGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAAC---ACTTGGG 109157 Query 155873 CAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACA 155932 | ||||| | ||||| ||| | |||||||||||||||||||| ||||||||||||| Sbjct 109158 CTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGCTCACA 109217 Query 155933 ACTTCCCTCTTGACCTTGCTGCTG 155956 ||||||| | ||| | ||| ||| Sbjct 109218 ACTTCCCATTAGACTTAGCTTCTG 109241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584786073843200