Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq6720 677 0.0 >seq6720 Length=135362 Score = 677 bits (750), Expect = 0.0 Identities = 745/989 (75%), Gaps = 2/989 (0%) Strand=Plus/Plus Query 40528 CAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTA 40587 ||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||| Sbjct 36407 CAGAAGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATTACTTCCATACCTA 36466 Query 40588 GACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTA 40647 | | ||| | | ||||||||||| | || ||| | | || || | Sbjct 36467 AGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGTGAATCAACAA 36526 Query 40648 CTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGG 40707 |||| ||||| ||||| || || || | ||| || |||||||| |||| ||| | | | Sbjct 36527 CTGATTGGTTGAAGTTGAACCCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAG 36586 Query 40708 TAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGT 40767 | | ||| |||| || ||||| ||||| | | |||||||||| | ||| |||| Sbjct 36587 TGAACCAAATGCAGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGT 36646 Query 40768 TGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTAT 40827 ||||||| || ||||| || |||| | |||||||||||||||||||||||||||||| | Sbjct 36647 TGAATGATGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGT 36706 Query 40828 AAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCT 40887 ||||||| |||| |||||||| || || || | ||| ||||| |||| || || | Sbjct 36707 AAGTCTCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCAGATTCGTTTTCAGTAGTTT 36766 Query 40888 CCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAA 40947 | || || | ||| ||||| || | ||||||||||| | || || | |||||||| Sbjct 36767 CACGGATTAATGATGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCACCAA 36826 Query 40948 AGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGA 41007 | || || ||||| || | ||| |||||||||||||| | ||||||||| || ||||||| Sbjct 36827 ATACACCAGCAACACCTAACATGTGGAATGGGTGCATTAAAATGTTGTGCTCAGCTTGGA 36886 Query 41008 AGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAAC 41067 | || | |||||||||||| || ||| ||| |||||||||||||||||||||||||||| Sbjct 36887 ATACGATCATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAAC 36946 Query 41068 CCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATG 41127 | || |||| ||| || | ||||||||| || || || | | |||||||| ||| | Sbjct 36947 CTTGTCCGATTGGGTAGATTAAGAATACTGCAGTTGCAGCAGCTACTGGAGCTGAGTAAG 37006 Query 41128 CCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGT 41187 | ||| | ||||| || | |||||||| | ||| ||||||||||||| | ||| || Sbjct 37007 CAACACAGATCCAAGGACGCATACCTAAACGGTAAGAAAGTTCCCACTCACGACCCATGT 37066 Query 41188 ATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATA 41247 | | ||| || |||| ||| ||||| | || || | ||| || || || |||||||||| Sbjct 37067 AAGATGCAACACCTAATAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATA 37126 Query 41248 GCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAG 41307 ||||||||| | | | |||||||| ||||||||||| || || ||||||||||||| Sbjct 37127 ACCACTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTAG 37186 Query 41308 AGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGG 41367 | | || | | ||| ||||| || || ||||| ||||| | ||| || || ||||| | Sbjct 37187 ATGTAGGGATAATAGCACCAGAGATGATGTTGTTACCGTATAATAAAGAACCAGAAACTG 37246 Query 41368 GCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACAT 41426 ||||||| || ||||| |||||||| || || |||||||| ||| |||| ||||| ||| Sbjct 37247 GCTCACGGATACCATCGATATCTACTGGAGGAGCTGCGATGAAGCCGATAATGAATACA- 37305 Query 41427 GTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGG 41486 | ||||| |||| ||| || ||||||| |||||| |||||||| | ||||| ||| Sbjct 37306 GATGTAGCTGTTAATAAGCAAGGGATCATTAACACACCGAACCAACCGATGTATAAACGG 37365 Query 41487 TTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 || || || ||||| ||| | |||||| Sbjct 37366 TTTTCAGTTGAAGTGATCCACTCACAAAA 37394 Score = 677 bits (750), Expect = 0.0 Identities = 745/989 (75%), Gaps = 2/989 (0%) Strand=Plus/Minus Query 40528 CAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTA 40587 ||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||| Sbjct 109241 CAGAAGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATTACTTCCATACCTA 109182 Query 40588 GACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTA 40647 | | ||| | | ||||||||||| | || ||| | | || || | Sbjct 109181 AGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGTGAATCAACAA 109122 Query 40648 CTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGG 40707 |||| ||||| ||||| || || || | ||| || |||||||| |||| ||| | | | Sbjct 109121 CTGATTGGTTGAAGTTGAACCCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAG 109062 Query 40708 TAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGT 40767 | | ||| |||| || ||||| ||||| | | |||||||||| | ||| |||| Sbjct 109061 TGAACCAAATGCAGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGT 109002 Query 40768 TGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTAT 40827 ||||||| || ||||| || |||| | |||||||||||||||||||||||||||||| | Sbjct 109001 TGAATGATGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGT 108942 Query 40828 AAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCT 40887 ||||||| |||| |||||||| || || || | ||| ||||| |||| || || | Sbjct 108941 AAGTCTCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCAGATTCGTTTTCAGTAGTTT 108882 Query 40888 CCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAA 40947 | || || | ||| ||||| || | ||||||||||| | || || | |||||||| Sbjct 108881 CACGGATTAATGATGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCACCAA 108822 Query 40948 AGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGA 41007 | || || ||||| || | ||| |||||||||||||| | ||||||||| || ||||||| Sbjct 108821 ATACACCAGCAACACCTAACATGTGGAATGGGTGCATTAAAATGTTGTGCTCAGCTTGGA 108762 Query 41008 AGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAAC 41067 | || | |||||||||||| || ||| ||| |||||||||||||||||||||||||||| Sbjct 108761 ATACGATCATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAAC 108702 Query 41068 CCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATG 41127 | || |||| ||| || | ||||||||| || || || | | |||||||| ||| | Sbjct 108701 CTTGTCCGATTGGGTAGATTAAGAATACTGCAGTTGCAGCAGCTACTGGAGCTGAGTAAG 108642 Query 41128 CCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGT 41187 | ||| | ||||| || | |||||||| | ||| ||||||||||||| | ||| || Sbjct 108641 CAACACAGATCCAAGGACGCATACCTAAACGGTAAGAAAGTTCCCACTCACGACCCATGT 108582 Query 41188 ATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATA 41247 | | ||| || |||| ||| ||||| | || || | ||| || || || |||||||||| Sbjct 108581 AAGATGCAACACCTAATAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATA 108522 Query 41248 GCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAG 41307 ||||||||| | | | |||||||| ||||||||||| || || ||||||||||||| Sbjct 108521 ACCACTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTAG 108462 Query 41308 AGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGG 41367 | | || | | ||| ||||| || || ||||| ||||| | ||| || || ||||| | Sbjct 108461 ATGTAGGGATAATAGCACCAGAGATGATGTTGTTACCGTATAATAAAGAACCAGAAACTG 108402 Query 41368 GCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACAT 41426 ||||||| || ||||| |||||||| || || |||||||| ||| |||| ||||| ||| Sbjct 108401 GCTCACGGATACCATCGATATCTACTGGAGGAGCTGCGATGAAGCCGATAATGAATACA- 108343 Query 41427 GTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGG 41486 | ||||| |||| ||| || ||||||| |||||| |||||||| | ||||| ||| Sbjct 108342 GATGTAGCTGTTAATAAGCAAGGGATCATTAACACACCGAACCAACCGATGTATAAACGG 108283 Query 41487 TTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 || || || ||||| ||| | |||||| Sbjct 108282 TTTTCAGTTGAAGTGATCCACTCACAAAA 108254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143690932548480