Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq6720 765 0.0 >seq6720 Length=135362 Score = 765 bits (848), Expect = 0.0 Identities = 763/986 (77%), Gaps = 2/986 (0%) Strand=Plus/Plus Query 67357 CAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCC-A 67415 ||| ||| | ||| | |||||||||||||||||||| |||||||| |||||||| || | Sbjct 36407 CAGAAGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATTACTTCCATACCTA 36466 Query 67416 AGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCGTCAACG 67475 ||| || | ||| | |||||| |||||||| | || ||| || ||||| Sbjct 36467 AGTTA-GCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGTGAATCAACA 36525 Query 67476 ACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCA 67535 || ||||||||||||||||| ||||| | |||||||||||||||||| | ||| | ||| Sbjct 36526 ACTGATTGGTTGAAGTTGAACCCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCA 36585 Query 67536 GTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTG 67595 |||||||| ||||||| || || | ||||| | ||||||||| | | |||||| Sbjct 36586 GTGAACCAAATGCAGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTG 36645 Query 67596 TTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTG 67655 ||||| ||||| || |||||||| || ||||| ||||| || || ||||| || |||||| Sbjct 36646 TTGAATGATGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTG 36705 Query 67656 TAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTT 67715 ||||||||||||||||| || || |||||||| | ||| || || | ||||||||| Sbjct 36706 TAAGTCTCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCAGATTCGTTTTCAGTAGTT 36765 Query 67716 TCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCG 67775 || | ||| | || ||||| || | |||||||||||||| || | ||||||||| Sbjct 36766 TCACGGATTAATGATGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCACCA 36825 Query 67776 AATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGG 67835 |||||||| || || || | ||| |||||||||||||| | ||||||||||| |||||| Sbjct 36826 AATACACCAGCAACACCTAACATGTGGAATGGGTGCATTAAAATGTTGTGCTCAGCTTGG 36885 Query 67836 AACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAA 67895 || |||| |||| |||| ||||||||||| ||||| | |||||| | |||||||||||| Sbjct 36886 AATACGATCATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAA 36945 Query 67896 CCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTAT 67955 ||||| |||| || |||| ||||| || || ||| |||| |||||||| ||||| Sbjct 36946 CCTTGTCCGATTGGGTAGATTAAGAATACTGCAGTTGCAGCAGCTACTGGAGCTGAGTAA 37005 Query 67956 GCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAG 68015 || ||||||||||||||||||||||| | |||||||||||||||||||| |||||| | Sbjct 37006 GCAACACAGATCCAAGGACGCATACCTAAACGGTAAGAAAGTTCCCACTCACGACCCATG 37065 Query 68016 TATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATAC 68075 || | || | || | | ||||||| | || | | |||| |||| ||||| || || Sbjct 37066 TAAGATGCAACACCTAATAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTAT 37125 Query 68076 AACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTT 68135 |||||||| |||| || || |||||||| || || ||||||||||||||||||||||| Sbjct 37126 AACCACTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTA 37185 Query 68136 GAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACA 68195 || |||| | || ||||||||| ||||||||||||||||| | | ||||| | ||| Sbjct 37186 GATGTAGGGATAATAGCACCAGAGATGATGTTGTTACCGTATAATAAAGAACCAGAAACT 37245 Query 68196 GGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAA 68255 || || | ||||||||||||||| |||||||| ||||| ||||| | || ||||| | Sbjct 37246 GGCTCACGGATACCATCGATATCTACTGGAGGAGCTGCGATGAAGCCGATAATGAATACA 37305 Query 68256 GTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAACATAGATGCGA 68315 | || |||| | |||||||| ||||| ||||||||||||||||| | || | || Sbjct 37306 GATGTAGCTGTTAATAAGCAAGGGATCATTAACACACCGAACCAACCGATGTATAAACGG 37365 Query 68316 TTGTCAACTGAGGTGACCCAGTTACA 68341 || ||| ||| |||| ||| | ||| Sbjct 37366 TTTTCAGTTGAAGTGATCCACTCACA 37391 Score = 765 bits (848), Expect = 0.0 Identities = 763/986 (77%), Gaps = 2/986 (0%) Strand=Plus/Minus Query 67357 CAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCC-A 67415 ||| ||| | ||| | |||||||||||||||||||| |||||||| |||||||| || | Sbjct 109241 CAGAAGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATTACTTCCATACCTA 109182 Query 67416 AGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCGTCAACG 67475 ||| || | ||| | |||||| |||||||| | || ||| || ||||| Sbjct 109181 AGTTA-GCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGTGAATCAACA 109123 Query 67476 ACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCA 67535 || ||||||||||||||||| ||||| | |||||||||||||||||| | ||| | ||| Sbjct 109122 ACTGATTGGTTGAAGTTGAACCCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCA 109063 Query 67536 GTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTG 67595 |||||||| ||||||| || || | ||||| | ||||||||| | | |||||| Sbjct 109062 GTGAACCAAATGCAGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTG 109003 Query 67596 TTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTG 67655 ||||| ||||| || |||||||| || ||||| ||||| || || ||||| || |||||| Sbjct 109002 TTGAATGATGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTG 108943 Query 67656 TAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTT 67715 ||||||||||||||||| || || |||||||| | ||| || || | ||||||||| Sbjct 108942 TAAGTCTCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCAGATTCGTTTTCAGTAGTT 108883 Query 67716 TCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCG 67775 || | ||| | || ||||| || | |||||||||||||| || | ||||||||| Sbjct 108882 TCACGGATTAATGATGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCACCA 108823 Query 67776 AATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGG 67835 |||||||| || || || | ||| |||||||||||||| | ||||||||||| |||||| Sbjct 108822 AATACACCAGCAACACCTAACATGTGGAATGGGTGCATTAAAATGTTGTGCTCAGCTTGG 108763 Query 67836 AACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAA 67895 || |||| |||| |||| ||||||||||| ||||| | |||||| | |||||||||||| Sbjct 108762 AATACGATCATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAA 108703 Query 67896 CCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTAT 67955 ||||| |||| || |||| ||||| || || ||| |||| |||||||| ||||| Sbjct 108702 CCTTGTCCGATTGGGTAGATTAAGAATACTGCAGTTGCAGCAGCTACTGGAGCTGAGTAA 108643 Query 67956 GCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAG 68015 || ||||||||||||||||||||||| | |||||||||||||||||||| |||||| | Sbjct 108642 GCAACACAGATCCAAGGACGCATACCTAAACGGTAAGAAAGTTCCCACTCACGACCCATG 108583 Query 68016 TATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATAC 68075 || | || | || | | ||||||| | || | | |||| |||| ||||| || || Sbjct 108582 TAAGATGCAACACCTAATAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTAT 108523 Query 68076 AACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTT 68135 |||||||| |||| || || |||||||| || || ||||||||||||||||||||||| Sbjct 108522 AACCACTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTA 108463 Query 68136 GAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACA 68195 || |||| | || ||||||||| ||||||||||||||||| | | ||||| | ||| Sbjct 108462 GATGTAGGGATAATAGCACCAGAGATGATGTTGTTACCGTATAATAAAGAACCAGAAACT 108403 Query 68196 GGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAA 68255 || || | ||||||||||||||| |||||||| ||||| ||||| | || ||||| | Sbjct 108402 GGCTCACGGATACCATCGATATCTACTGGAGGAGCTGCGATGAAGCCGATAATGAATACA 108343 Query 68256 GTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAACATAGATGCGA 68315 | || |||| | |||||||| ||||| ||||||||||||||||| | || | || Sbjct 108342 GATGTAGCTGTTAATAAGCAAGGGATCATTAACACACCGAACCAACCGATGTATAAACGG 108283 Query 68316 TTGTCAACTGAGGTGACCCAGTTACA 68341 || ||| ||| |||| ||| | ||| Sbjct 108282 TTTTCAGTTGAAGTGATCCACTCACA 108257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566899576435200