Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq6720 710 0.0 >seq6720 Length=135362 Score = 710 bits (786), Expect = 0.0 Identities = 762/997 (76%), Gaps = 18/997 (2%) Strand=Plus/Plus Query 67838 CAGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCA 67897 ||| ||| | ||| | ||||||||||| |||||||| || ||||| ||||||||||| | Sbjct 36407 CAGAAGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATTACTTCCATACCTA 36466 Query 67898 AACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGA 67957 | ||| ||||||| | ||| ||||| || | || ||| ||||| | Sbjct 36467 AGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGTGAATCAACAA 36526 Query 67958 TAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCAT-GGTGCTAACACCAAGTGCA 68016 || |||||||||||||| || || | |||||||||||| | || ||| ||| | ||| Sbjct 36527 CTGATTGGTTGAAGTTGAACCCGTTTAAGTTGAATGCCATAGTTGATAA-ACCTAAAGCA 36585 Query 68017 GTGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTG 68076 |||||||| || | | || ||||| ||||| | ||||||||| | ||||| |||||| Sbjct 36586 GTGAACCAAATGCAGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTG 36645 Query 68077 TTGAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTG 68136 ||||| ||||| || |||||||| | |||||| ||||| || |||||||| || |||||| Sbjct 36646 TTGAATGATGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTG 36705 Query 68137 TAAGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTT 68196 |||||||||||||||||||| || |||||||| | ||| || || ||||||| ||| Sbjct 36706 TAAGTCTCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCAGATTCGTTTTCAGTAGTT 36765 Query 68197 TCACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCA 68256 ||||| | | ||| ||||| || | ||||| ||||| || ||| | || |||||| Sbjct 36766 TCACGGATTAATGATGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCACCA 36825 Query 68257 AATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGG 68316 ||||| |||||||| || | ||| ||||| |||||||| | ||||||||||| |||||| Sbjct 36826 AATACACCAGCAACACCTAACATGTGGAATGGGTGCATTAAAATGTTGTGCTCAGCTTGG 36885 Query 68317 AACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAA 68376 || || | |||| |||||||||||||||| || || | |||||| | |||||||| ||| Sbjct 36886 AATACGATCATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAA 36945 Query 68377 CCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTAT 68436 ||||| |||| || |||| | ||| ||||| | ||| || || || || || ||||| Sbjct 36946 CCTTGTCCGATTGGGTAGATTAAGAATACTGCAGTTGCAGCAGCTACTGGAGCTGAGTAA 37005 Query 68437 GCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATG 68496 |||||||||||||||||||||||||| | ||| || ||||||||||| ||||| |||||| Sbjct 37006 GCAACACAGATCCAAGGACGCATACCTAAACGGTAAGAAAGTTCCCACTCACGACCCATG 37065 Query 68497 T---ATGCAAAGATACCAATCAGGAAGTG---AAAGATTACGAGTTGGAAAGGACCACCA 68550 | ||||| | ||| | | |||||| || |||| | |||| |||||||||| Sbjct 37066 TAAGATGCA---ACACCTAATAAGAAGTGGCAAACGATT---AATTGGTAAGGACCACCG 37119 Query 68551 TTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATT 68610 ||||| |||||||| || | | || ||||||||||| || || ||||||||||| ||| Sbjct 37120 TTGTATAACCACTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATT 37179 Query 68611 GCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCA 68670 || || || |||| | || ||||||||| |||||||||||||| || | | |||||| Sbjct 37180 GCGTTAGATGTAGGGATAATAGCACCAGAGATGATGTTGTTACCGTATAATAAAGAACCA 37239 Query 68671 GCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATG 68730 | ||| || ||||| ||||||||||| || || || ||||| ||||||||| ||| ||| Sbjct 37240 GAAACTGGCTCACGGATACCATCGATATCTACTGGAGGAGCTGCGATGAAGCCGATAATG 37299 Query 68731 AA-ACAGATGGTTGCTG-CAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGT 68788 || |||||| || |||| || ||| ||||||||| | || ||||||||||| | || Sbjct 37300 AATACAGAT-GTAGCTGTTAATAAGC-AAGGGATCATTAACACACCGAACCAACCGATGT 37357 Query 68789 AAAGGCGGTTCTCTGTGGAAGTCACCCATTCGCAGAA 68825 | | ||||| || || ||||| | ||| || || || Sbjct 37358 ATAAACGGTTTTCAGTTGAAGTGATCCACTCACAAAA 37394 Score = 710 bits (786), Expect = 0.0 Identities = 762/997 (76%), Gaps = 18/997 (2%) Strand=Plus/Minus Query 67838 CAGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCA 67897 ||| ||| | ||| | ||||||||||| |||||||| || ||||| ||||||||||| | Sbjct 109241 CAGAAGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATTACTTCCATACCTA 109182 Query 67898 AACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGA 67957 | ||| ||||||| | ||| ||||| || | || ||| ||||| | Sbjct 109181 AGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGTGAATCAACAA 109122 Query 67958 TAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGT-GCTAACACCAAGTGCA 68016 || |||||||||||||| || || | |||||||||||| || | ||| ||| | ||| Sbjct 109121 CTGATTGGTTGAAGTTGAACCCGTTTAAGTTGAATGCCATAGTTGATAA-ACCTAAAGCA 109063 Query 68017 GTGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTG 68076 |||||||| || | | || ||||| ||||| | ||||||||| | ||||| |||||| Sbjct 109062 GTGAACCAAATGCAGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTG 109003 Query 68077 TTGAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTG 68136 ||||| ||||| || |||||||| | |||||| ||||| || |||||||| || |||||| Sbjct 109002 TTGAATGATGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTG 108943 Query 68137 TAAGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTT 68196 |||||||||||||||||||| || |||||||| | ||| || || ||||||| ||| Sbjct 108942 TAAGTCTCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCAGATTCGTTTTCAGTAGTT 108883 Query 68197 TCACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCA 68256 ||||| | | ||| ||||| || | ||||| ||||| || ||| | || |||||| Sbjct 108882 TCACGGATTAATGATGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCACCA 108823 Query 68257 AATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGG 68316 ||||| |||||||| || | ||| ||||| |||||||| | ||||||||||| |||||| Sbjct 108822 AATACACCAGCAACACCTAACATGTGGAATGGGTGCATTAAAATGTTGTGCTCAGCTTGG 108763 Query 68317 AACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAA 68376 || || | |||| |||||||||||||||| || || | |||||| | |||||||| ||| Sbjct 108762 AATACGATCATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAA 108703 Query 68377 CCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTAT 68436 ||||| |||| || |||| | ||| ||||| | ||| || || || || || ||||| Sbjct 108702 CCTTGTCCGATTGGGTAGATTAAGAATACTGCAGTTGCAGCAGCTACTGGAGCTGAGTAA 108643 Query 68437 GCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATG 68496 |||||||||||||||||||||||||| | ||| || ||||||||||| ||||| |||||| Sbjct 108642 GCAACACAGATCCAAGGACGCATACCTAAACGGTAAGAAAGTTCCCACTCACGACCCATG 108583 Query 68497 T---ATGCAAAGATACCAATCAGGAAGTG---AAAGATTACGAGTTGGAAAGGACCACCA 68550 | ||||| | ||| | | |||||| || |||| | |||| |||||||||| Sbjct 108582 TAAGATGCA---ACACCTAATAAGAAGTGGCAAACGATT---AATTGGTAAGGACCACCG 108529 Query 68551 TTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATT 68610 ||||| |||||||| || | | || ||||||||||| || || ||||||||||| ||| Sbjct 108528 TTGTATAACCACTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATT 108469 Query 68611 GCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCA 68670 || || || |||| | || ||||||||| |||||||||||||| || | | |||||| Sbjct 108468 GCGTTAGATGTAGGGATAATAGCACCAGAGATGATGTTGTTACCGTATAATAAAGAACCA 108409 Query 68671 GCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATG 68730 | ||| || ||||| ||||||||||| || || || ||||| ||||||||| ||| ||| Sbjct 108408 GAAACTGGCTCACGGATACCATCGATATCTACTGGAGGAGCTGCGATGAAGCCGATAATG 108349 Query 68731 AA-ACAGATGGTTGCTG-CAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGT 68788 || |||||| || |||| || ||| ||||||||| | || ||||||||||| | || Sbjct 108348 AATACAGAT-GTAGCTGTTAATAAGC-AAGGGATCATTAACACACCGAACCAACCGATGT 108291 Query 68789 AAAGGCGGTTCTCTGTGGAAGTCACCCATTCGCAGAA 68825 | | ||||| || || ||||| | ||| || || || Sbjct 108290 ATAAACGGTTTTCAGTTGAAGTGATCCACTCACAAAA 108254 Score = 517 bits (572), Expect = 1e-141 Identities = 721/1010 (71%), Gaps = 8/1010 (1%) Strand=Plus/Minus Query 66587 TTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTTG 66646 ||| || || |||||||| || | ||||||||||||||||| ||| ||| || || || Sbjct 122718 TTATAGAGCGTTACCACGAGGTAATACTTCTTCTGGGAATACTAAGCGTTCGTGTGGCTG 122659 Query 66647 ATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGAA 66706 || | |||| ||| ||||| | ||||||||| | |||| ||| || |||||||| Sbjct 122658 GTCTTGTGCAGCCATCCAAGCACGGATACCTTCATTAAGAAGAAGGTTTTTAGTGTAGAA 122599 Query 66707 CGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACG 66766 || || || ||||| ||||| || || | |||||||| || || ||||| |||||||| Sbjct 122598 AGTTTCAAATTCTGGATCTTCAGCAGCACGAATCTCTTGTGAAACGAAGTCGTAAGCACG 122539 Query 66767 AAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAAC 66826 | ||| ||||| | ||| | || ||| || | | |||||||||| | |||||||| Sbjct 122538 TAAGTTAAGAGCTAAACCTACAACACCAATAGCAGACATCCAAAGACCTGTCACAGGAAC 122479 Query 66827 AAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAGA 66886 ||| ||||||||||| || ||||| | || || ||| || | |||||| || || || Sbjct 122478 AAATAACATAAAGAAGTGTAACCAACGTTTGTTTGAAAAAGCTACACCAAAAATTTGTGA 122419 Query 66887 CCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATGC 66946 |||||| | || || || ||||| |||||||||||||| |||| |||| || ||||| Sbjct 122418 CCAGAATCTATTAGCTGTTACCATAGAGTAAGTTTCTTCAGCTTGCGTAGGGTTAAATGC 122359 Query 66947 TTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCATG 67006 ||| ||||| || ||||||||||| | |||||||| ||||||||| ||||||| Sbjct 122358 ACGGAATGTGTTAGCACCATCACCATCTTCGAAAAGAGTATTTTCTACTGTAGCACCATG 122299 Query 67007 AATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGTT 67066 ||| ||| | | | || |||| | | ||| || || |||||||| || || ||||| Sbjct 122298 AATAGCACATAATAGAGCCGCACCTAAAACACCAGCAACTCCCATCATGTGGAATGGGTT 122239 Query 67067 CAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCCC 67126 | |||||||| ||||| ||||| | ||| | | || || || || || | || || Sbjct 122238 AAGTGTCCAGTTGTGGAAACCTTGGAAGAATAAGATAAAACGGAAAATAGCGGCAACACC 122179 Query 67127 GAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAAC 67186 ||| || ||||| ||||||| |||||||| | |||||| || | ||| ||| ||| Sbjct 122178 AAAACTAGGGGCGAAGAACCAACCAGATTGACCTAAAGGGTAAATTAAAAATACAGAAAC 122119 Query 67187 AAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGA----TACCGATGA 67242 ||| ||||| || || ||||||| ||||| || || || ||||| | ||| || Sbjct 122118 AAATACAGCAATTGGTGCAGAGAAAGCAATTGCGTTATATGGACGTAAGTTTACTGA--- 122062 Query 67243 GACGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCG 67302 |||||| | |||||| || || | ||| |||||||||| | | ||||| || || || | Sbjct 122061 -ACGTGCAATTTCAAATTGACGTAACATAAAACCAATTAAACCAAAAGCACCATGCAGTG 122003 Query 67303 CCACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAG 67362 | |||||| |||| | || || | ||| ||| || || || || |||| |||| Sbjct 122002 CTACAAAAGTCCATAAACCACCTAATTGACACCAACGTGTAAAGTCACCTTGAGCTTCAG 121943 Query 67363 GACCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTG 67422 | ||||||| | | | ||||||| ||||| | || || || || || || || | Sbjct 121942 GTCCCCAAATAAATAATAAAGAATGAGCCATACTGTTTGCTGGAGTCGAAACTGCAGCAG 121883 Query 67423 TGAGAAAATTAGCACCCTCAAGATAACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTGA 67482 | | || ||| ||| || | ||| || || | || || |||||||| || | Sbjct 121882 TTAAGAAGTTACAACCTTCTAAGTAAGAAGTTGCTAAACCATGTGTGTACCAAGAAGTAA 121823 Query 67483 CAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAGTA 67542 |||| || || ||||||| ||| ||||| | ||| | ||| ||| || || | ||| | Sbjct 121822 CAAATGTTGTCCCAGTAAACCAACCACCTAATGCAAAATACGCACAAGGTAATAAAAGAA 121763 Query 67543 GTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATCA 67592 | || |||||||| ||||| ||||| || ||| | | |||||||||| Sbjct 121762 GACCTGACCAACCTACAAAAACAAAACGGTCTTGACGTAACCAGTCATCA 121713 Score = 104 bits (114), Expect = 3e-17 Identities = 59/60 (98%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 35829 TAGGAGACTCGAACTCCTGACCCCCTGCGTGCAAAGCAGGTGCTCTACCAACTGAGCTAA 35888 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 40329 TAGGAGAGTCGAACTCCTGACCCCCTGCGTGCAAAGCAGGTGCTCTACCAACTGAGCTAA 40270 Score = 104 bits (114), Expect = 3e-17 Identities = 59/60 (98%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 35829 TAGGAGACTCGAACTCCTGACCCCCTGCGTGCAAAGCAGGTGCTCTACCAACTGAGCTAA 35888 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 105319 TAGGAGAGTCGAACTCCTGACCCCCTGCGTGCAAAGCAGGTGCTCTACCAACTGAGCTAA 105378 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 |||||||||||||| |||||||||||||| |||| ||||||| ||| ||||| |||||| Sbjct 122964 CTCCCCAGGTAGGACTTGAACCTACGACCTATCGGTTAACAGCCGACCGCTCTACCGCTG 122905 Query 35571 AGCTACTGAGGATT 35584 ||||||| |||||| Sbjct 122904 AGCTACTAAGGATT 122891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572006347430400