Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq6720 774 0.0 >seq6720 Length=135362 Score = 774 bits (858), Expect = 0.0 Identities = 770/993 (78%), Gaps = 8/993 (1%) Strand=Plus/Minus Query 157579 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 157638 ||| || |||||| | ||||| || | ||||| | || ||||||||||||| || | Sbjct 37395 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTT 37336 Query 157639 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 157697 ||||| || | || |||| || |||||| ||||| ||| |||| |||| |||| Sbjct 37335 AATGATCCCTTGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAGCTC 37277 Query 157698 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 157757 | || || || ||||| || |||||||| || || ||||||| | | || ||||||| Sbjct 37276 CTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACA 37217 Query 157758 ACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 157817 |||||||||||||||| || | || | || |||||||| |||||||||||||| || | Sbjct 37216 ACATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAA 37157 Query 157818 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 157877 | |||||||| || || | || |||||| | || ||||||||||||| |||| | | | Sbjct 37156 TTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCG 37097 Query 157878 TATTTCACTTCCTCATTGGTATCTATGCAT---ACATGGGACGTGAGTGGGAACTTTCAT 157934 | | |||||| | | ||| | ||||| ||||||| ||||||||||||||||| | Sbjct 37096 TTTGCCACTTCTTATTAGGTGT---TGCATCTTACATGGGTCGTGAGTGGGAACTTTCTT 37040 Query 157935 ACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCAT 157994 |||||||||||||||| || ||||||||||| || || || |||||||| ||||| ||| Sbjct 37039 ACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAA 36980 Query 157995 CTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTG 158054 |||| |||||| | |||| || |||| |||||||||||||| |||| ||||||| | | Sbjct 36979 CTGCAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAG 36920 Query 158055 GTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGC 158114 |||||||||||||||| |||| |||| | ||||||||||| || |||||||| | |||| Sbjct 36919 GTATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGC 36860 Query 158115 ACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGC 158174 |||| ||||| ||| | ||||||||||| ||||| ||||| || | ||||| ||||||| Sbjct 36859 ACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGC 36800 Query 158175 ACGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACT 158234 |||| | || ||||| ||| | | |||||||| ||||||| || || ||| Sbjct 36799 ACGGTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACG 36740 Query 158235 ACGGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACATGGCTACT 158294 | |||||||| || |||||||| |||||||| || |||||||| || ||||| || |||| Sbjct 36739 AAGGTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACT 36680 Query 158295 TCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCC 158354 | |||||||| |||||||||||||| |||||||||||||| ||||| || ||||||||| Sbjct 36679 TTGGTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCT 36620 Query 158355 TTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCAT 158414 | ||||| ||||| || || |||| |||||||| || | || | || || ||||||| Sbjct 36619 TAGCTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCAT 36560 Query 158415 TCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGA 158474 ||||| | ||||| |||||||||||||| || | ||||| || |||||||| || | Sbjct 36559 TCAACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAA 36500 Query 158475 ACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTA 158534 |||| ||||| || | | ||||| ||| | ||||||||||| ||||| || |||| Sbjct 36499 ACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTA 36440 Query 158535 ACGCACACAACTTCCCACTCGACCTTGCTGCTG 158567 |||| |||||||||||| | ||| | ||| ||| Sbjct 36439 ACGCTCACAACTTCCCATTAGACTTAGCTTCTG 36407 Score = 774 bits (858), Expect = 0.0 Identities = 770/993 (78%), Gaps = 8/993 (1%) Strand=Plus/Plus Query 157579 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 157638 ||| || |||||| | ||||| || | ||||| | || ||||||||||||| || | Sbjct 108253 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTT 108312 Query 157639 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 157697 ||||| || | || |||| || |||||| ||||| ||| |||| |||| |||| Sbjct 108313 AATGATCCCTTGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAGCTC 108371 Query 157698 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 157757 | || || || ||||| || |||||||| || || ||||||| | | || ||||||| Sbjct 108372 CTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACA 108431 Query 157758 ACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 157817 |||||||||||||||| || | || | || |||||||| |||||||||||||| || | Sbjct 108432 ACATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAA 108491 Query 157818 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 157877 | |||||||| || || | || |||||| | || ||||||||||||| |||| | | | Sbjct 108492 TTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCG 108551 Query 157878 TATTTCACTTCCTCATTGGTATCTATGCA---TACATGGGACGTGAGTGGGAACTTTCAT 157934 | | |||||| | | ||| | |||| |||||||| ||||||||||||||||| | Sbjct 108552 TTTGCCACTTCTTATTAGGTGT---TGCATCTTACATGGGTCGTGAGTGGGAACTTTCTT 108608 Query 157935 ACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCAT 157994 |||||||||||||||| || ||||||||||| || || || |||||||| ||||| ||| Sbjct 108609 ACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAA 108668 Query 157995 CTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTG 158054 |||| |||||| | |||| || |||| |||||||||||||| |||| ||||||| | | Sbjct 108669 CTGCAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAG 108728 Query 158055 GTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGC 158114 |||||||||||||||| |||| |||| | ||||||||||| || |||||||| | |||| Sbjct 108729 GTATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGC 108788 Query 158115 ACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGC 158174 |||| ||||| ||| | ||||||||||| ||||| ||||| || | ||||| ||||||| Sbjct 108789 ACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGC 108848 Query 158175 ACGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACT 158234 |||| | || ||||| ||| | | |||||||| ||||||| || || ||| Sbjct 108849 ACGGTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACG 108908 Query 158235 ACGGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACATGGCTACT 158294 | |||||||| || |||||||| |||||||| || |||||||| || ||||| || |||| Sbjct 108909 AAGGTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACT 108968 Query 158295 TCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCC 158354 | |||||||| |||||||||||||| |||||||||||||| ||||| || ||||||||| Sbjct 108969 TTGGTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCT 109028 Query 158355 TTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCAT 158414 | ||||| ||||| || || |||| |||||||| || | || | || || ||||||| Sbjct 109029 TAGCTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCAT 109088 Query 158415 TCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGA 158474 ||||| | ||||| |||||||||||||| || | ||||| || |||||||| || | Sbjct 109089 TCAACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAA 109148 Query 158475 ACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTA 158534 |||| ||||| || | | ||||| ||| | ||||||||||| ||||| || |||| Sbjct 109149 ACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTA 109208 Query 158535 ACGCACACAACTTCCCACTCGACCTTGCTGCTG 158567 |||| |||||||||||| | ||| | ||| ||| Sbjct 109209 ACGCTCACAACTTCCCATTAGACTTAGCTTCTG 109241 Score = 527 bits (584), Expect = 7e-145 Identities = 726/1010 (72%), Gaps = 10/1010 (1%) Strand=Plus/Plus Query 159306 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTT 159365 ||||||||| | | ||| || ||||||||||| || ||||| || || || | | Sbjct 121714 GATGACTGGTTACGTCAAGACCGTTTTGTTTTTGTAGGTTGGTCAGGTCTTCTTTTATTA 121773 Query 159366 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 159425 || ||| ||| | || | || |||||| ||||||| ||| | |||||||| |||| Sbjct 121774 CCTTGTGCGTATTTTGCATTAGGTGGTTGGTTTACTGGGACAACATTTGTTACTTCTTGG 121833 Query 159426 TACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCAGCTGTC 159485 ||||| || ||| | || | ||| || | || ||| |||||| | || || || || Sbjct 121834 TACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCAGTT 121893 Query 159486 TCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 159545 ||||| || || || ||||| ||||||| | | | ||||||| ||||| |||| Sbjct 121894 TCGACTCCAGCAAACAGTATGGCTCATTCTTTATTATTTATTTGGGGACCTGAAGCTCAA 121953 Query 159546 GG-GAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGG 159604 || || ||| || || ||||| ||| | || || ||||||| |||||| ||||| || || Sbjct 121954 GGTGACTTTACA-CGTTGGTGTCAATTAGGTGGTTTATGGACTTTTGTAGCACTGCATGG 122012 Query 159605 TGCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACGTCTCATTGGTA- 159663 ||| || | |||||||||| ||| | ||||| |||||| | |||||| ||| ||| Sbjct 122013 TGCTTTTGGTTTAATTGGTTTTATGTTACGTCAATTTGAAATTGCACGT-TCA---GTAA 122068 Query 159664 ---TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCT 159720 | ||||| || || || ||||| ||||||| || |||||||| ||||| || | Sbjct 122069 ACTTACGTCCATATAACGCAATTGCTTTCTCTGCACCAATTGCTGTATTTGTTTCTGTAT 122128 Query 159721 TCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAG 159780 | | || ||||| || ||||| || ||||||| ||||| || ||||| || || | Sbjct 122129 TTTTAATTTACCCTTTAGGTCAATCTGGTTGGTTCTTCGCCCCTAGTTTTGGTGTTGCCG 122188 Query 159781 CAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCC 159840 | || || | || | || ||| | ||||| || ||||||||||| | || || |||| Sbjct 122189 CTATTTTCCGTTTTATCTTATTCTTCCAAGGTTTCCACAACTGGACACTTAACCCATTCC 122248 Query 159841 ATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTA 159900 | |||||||||||||||||| | |||||| || ||| | |||| || ||||| | || Sbjct 122249 ACATGATGGGAGTTGCTGGTGTTTTAGGTGCGGCTCTATTATGTGCTATTCATGGTGCTA 122308 Query 159901 CTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATT 159960 | ||||| || || || | |||||||| || || || || || || ||| | Sbjct 122309 CAGTAGAAAATACTCTTTTCGAAGATGGTGATGGTGCTAACACATTCCGTGCATTTAACC 122368 Query 159961 CAACTCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCT 160020 | || |||| || || |||||||||||||| || || || | |||||||| || || | Sbjct 122369 CTACGCAAGCTGAAGAAACTTACTCTATGGTAACAGCTAATAGATTCTGGTCACAAATTT 122428 Query 160021 TCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTA 160080 | ||| | || ||||| ||||| || ||| | || ||||| ||||| ||||| ||||| | Sbjct 122429 TTGGTGTAGCTTTTTCAAACAAACGTTGGTTACACTTCTTTATGTTATTTGTTCCTGTGA 122488 Query 160081 TGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACG 160140 |||||||||| || ||||||| || | || | |||||||| | |||||||||| Sbjct 122489 CAGGTCTTTGGATGTCTGCTATTGGTGTTGTAGGTTTAGCTCTTAACTTACGTGCTTACG 122548 Query 160141 ATTTCGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCA 160200 | ||||| |||||||| | || || ||||||||||||||||| || |||||||| | Sbjct 122549 ACTTCGTTTCACAAGAGATTCGTGCTGCTGAAGATCCAGAATTTGAAACTTTCTACACTA 122608 Query 160201 AAAACATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATG 160260 ||||| | || | || ||||| | ||||| ||| |||| | || || || || | Sbjct 122609 AAAACCTTCTTCTTAATGAAGGTATCCGTGCTTGGATGGCTGCACAAGACCAGCCACACG 122668 Query 160261 AAAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAA 160310 || ||| | ||||||||||||||||| ||| | || ||||| || ||| Sbjct 122669 AACGCTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGCTCTATAA 122718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548328336550400