Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq6720 726 0.0 >seq6720 Length=135362 Score = 726 bits (804), Expect = 0.0 Identities = 756/989 (76%), Gaps = 2/989 (0%) Strand=Plus/Minus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 |||||||||||| | || || ||||| || || | ||| | |||||||| ||||| ||| Sbjct 37394 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 37335 Query 72295 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 72354 |||||||| || | |||| ||| | || |||||| | | |||||||| |||||| Sbjct 37334 ATGATCCCTTGCTTATTAACAGCTACATCTGTATTCATTATCGGCTTCATCGCAGCTCCT 37275 Query 72355 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 72414 ||||| |||||||| || ||| | || |||||| | |||||||| ||||| ||||||||| Sbjct 37274 CCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAAC 37215 Query 72415 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 72474 ||||||||||||||| | | || | || |||||||| || | |||||||| || || Sbjct 37214 ATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAATT 37155 Query 72475 TGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATT 72534 |||||||| || || | ||||||||||| || ||||| ||||||||||| ||| | || Sbjct 37154 TGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTT 37095 Query 72535 TTCCACTTCCTTATT-GGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAG 72593 | ||||||| ||||| || | | | ||||||||| | |||||||||| || ||| | Sbjct 37094 TGCCACTTC-TTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 37036 Query 72594 ACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGC 72653 |||| ||| | |||||||| ||||| || |||||||| || ||| |||| ||| ||| Sbjct 37035 TTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGC 36976 Query 72654 AGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 72713 ||||||| | | || ||| |||| || ||||| ||||||||||||||||| ||||||| Sbjct 36975 AGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 36916 Query 72714 CTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCC 72773 ||| ||||| |||||||||||| |||| |||||||| || |||||||| |||||||||| Sbjct 36915 CTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCC 36856 Query 72774 CTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGG 72833 ||||| ||| |||||| || ||| | || |||||| | ||| || |||||||| Sbjct 36855 ATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGG 36796 Query 72834 TTCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGG 72893 |||| | || |||||||| ||||| | || || || || ||||| | ||| | || Sbjct 36795 TTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGG 36736 Query 72894 CTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGG 72953 || || || || ||||||||||| || || ||||| || ||||| || || ||||| || Sbjct 36735 TTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGG 36676 Query 72954 TAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGC 73013 | | ||||||||||| || |||||||||||||||||||||||||||||||||||| | || Sbjct 36675 TCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGC 36616 Query 73014 TGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAA 73073 || | || ||| |||| | ||||| || | | ||| | | || ||||||||||| Sbjct 36615 TGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCAA 36556 Query 73074 CCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAAC 73133 | | ||||| ||||||||||||||||||||||| ||| || | || | || || Sbjct 36555 CTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACAC 36496 Query 73134 ATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGC 73193 |||| || | | ||| | || ||| | || |||||||| ||||| ||| | || || Sbjct 36495 TTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGC 36436 Query 73194 ACACAACTTCCCACTAGACCTAGCATCTG 73222 |||||||||||| ||||| |||| |||| Sbjct 36435 TCACAACTTCCCATTAGACTTAGCTTCTG 36407 Score = 726 bits (804), Expect = 0.0 Identities = 756/989 (76%), Gaps = 2/989 (0%) Strand=Plus/Plus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 |||||||||||| | || || ||||| || || | ||| | |||||||| ||||| ||| Sbjct 108254 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 108313 Query 72295 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 72354 |||||||| || | |||| ||| | || |||||| | | |||||||| |||||| Sbjct 108314 ATGATCCCTTGCTTATTAACAGCTACATCTGTATTCATTATCGGCTTCATCGCAGCTCCT 108373 Query 72355 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 72414 ||||| |||||||| || ||| | || |||||| | |||||||| ||||| ||||||||| Sbjct 108374 CCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAAC 108433 Query 72415 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 72474 ||||||||||||||| | | || | || |||||||| || | |||||||| || || Sbjct 108434 ATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAATT 108493 Query 72475 TGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATT 72534 |||||||| || || | ||||||||||| || ||||| ||||||||||| ||| | || Sbjct 108494 TGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTT 108553 Query 72535 TTCCACTTCCTTATT-GGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAG 72593 | |||||| |||||| || | | | ||||||||| | |||||||||| || ||| | Sbjct 108554 TGCCACTT-CTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 108612 Query 72594 ACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGC 72653 |||| ||| | |||||||| ||||| || |||||||| || ||| |||| ||| ||| Sbjct 108613 TTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGC 108672 Query 72654 AGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 72713 ||||||| | | || ||| |||| || ||||| ||||||||||||||||| ||||||| Sbjct 108673 AGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 108732 Query 72714 CTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCC 72773 ||| ||||| |||||||||||| |||| |||||||| || |||||||| |||||||||| Sbjct 108733 CTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCC 108792 Query 72774 CTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGG 72833 ||||| ||| |||||| || ||| | || |||||| | ||| || |||||||| Sbjct 108793 ATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGG 108852 Query 72834 TTCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGG 72893 |||| | || |||||||| ||||| | || || || || ||||| | ||| | || Sbjct 108853 TTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGG 108912 Query 72894 CTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGG 72953 || || || || ||||||||||| || || ||||| || ||||| || || ||||| || Sbjct 108913 TTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGG 108972 Query 72954 TAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGC 73013 | | ||||||||||| || |||||||||||||||||||||||||||||||||||| | || Sbjct 108973 TCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGC 109032 Query 73014 TGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAA 73073 || | || ||| |||| | ||||| || | | ||| | | || ||||||||||| Sbjct 109033 TGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCAA 109092 Query 73074 CCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAAC 73133 | | ||||| ||||||||||||||||||||||| ||| || | || | || || Sbjct 109093 CTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACAC 109152 Query 73134 ATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGC 73193 |||| || | | ||| | || ||| | || |||||||| ||||| ||| | || || Sbjct 109153 TTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGC 109212 Query 73194 ACACAACTTCCCACTAGACCTAGCATCTG 73222 |||||||||||| ||||| |||| |||| Sbjct 109213 TCACAACTTCCCATTAGACTTAGCTTCTG 109241 Score = 529 bits (586), Expect = 2e-145 Identities = 741/1043 (71%), Gaps = 21/1043 (2%) Strand=Plus/Plus Query 73361 TGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCT 73420 |||||||||| | |||||| |||||| ||| ||||| || || | || ||||| Sbjct 121699 TGGTTTGACGATTGTGATGACTGGTTACGTCAAGACCGTTTTGTTTTTGTAGGTTGGTCA 121758 Query 73421 GGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACT 73480 |||||| | | ||||||||||| || | ||| | || |||||||| || || || Sbjct 121759 GGTCTTCTTTTATTACCTTGTGCGTATTTTGCATTAGGTGGTTGGTTTACTGGGACAACA 121818 Query 73481 TTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTT 73540 || || || || ||||||||||||||| | ||| | || || | || || || || Sbjct 121819 TTTGTTACTTCTTGGTACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTTC 121878 Query 73541 TTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGG 73600 |||||||| ||||| || || || | | ||||| |||| | |||| || ||||| Sbjct 121879 TTAACTGCTGCAGTTTCGACTCCAGCAAACAGTATGGCTCATTCTTTATTATTTATTTGG 121938 Query 73601 GGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTT 73660 ||||| || || ||||| || || ||| |||| |||||||||||| |||||| ||| Sbjct 121939 GGACCTGAAGCTCAAGGTGACTTTACACGTTGGTGTCAATTAGGTGGTTTATGGACTTTT 121998 Query 73661 GTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCA 73720 |||||| | ||||| | ||||| | || ||||| ||| | | || ||||| |||||| Sbjct 121999 GTAGCACTGCATGGTGCTTTTGGTTTAATTGGTTTTATGTTACGTCAATTTGAAATTGCA 122058 Query 73721 GGACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATTC 73780 | || ||||||| || |||||| | ||||| || ||| || || ||||| Sbjct 122059 CGTTCAGTAAACTTACGTCCATATAACGCAATTGCTTTCTCTGCACCAATTGCTGTATTT 122118 Query 73781 ACGAGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTC 73840 | ||| |||| || |||||||| || | ||||||||||||| ||| || Sbjct 122119 GTTTCTGTATTTTTAATTTACCCTTTAGGTCAATCTGGTTGGTTCTTCGCCCCTAGTTTT 122178 Query 73841 GGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTT 73900 ||||| || || || || |||| ||| |||||| | || ||||||||||| || ||| Sbjct 122179 GGTGTTGCCGCTATTTTCCGTTTTATCTTATTCTTCCAAGGTTTCCACAACTGGACACTT 122238 Query 73901 AATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATA 73960 || ||||| || |||||||| || || ||| | | |||| || || ||||||| || Sbjct 122239 AACCCATTCCACATGATGGGAGTTGCTGGTGTTTTAGGTGCGGCTCTATTATGTGCTATT 122298 Query 73961 CATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAG 74020 |||||||| |||||| | || || | | |||| | ||| ||| Sbjct 122299 CATGGTGCTACAGTAGAAAATACTCTTTTCGAAG------------ATGGTGATGGT--- 122343 Query 74021 ATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTATAGTATG 74080 ||| || ||| | ||||| | ||||| || | ||||| ||||| |||| Sbjct 122344 ------GCTAACACATTCCGTGCATTTAACCCTACGCAAGCTGAAGAAACTTACTCTATG 122397 Query 74081 ATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTC 74140 | || ||||| |||||||||||||| || |||||| |||| |||||||||||| | | Sbjct 122398 GTAACAGCTAATAGATTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAACAAACGTTGG 122457 Query 74141 TTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATC 74200 ||||||||| ||||||| || || ||||| | ||| | |||| || |||| ||| | Sbjct 122458 TTACACTTCTTTATGTTATTTGTTCCTGTGACAGGTCTTTGGATGTCTGCTATTGGTGTT 122517 Query 74201 GTAGGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCA 74260 |||||| |||| |||||| | | || |||||||| || || |||||||| | || || Sbjct 122518 GTAGGTTTAGCTCTTAACTTACGTGCTTACGACTTCGTTTCACAAGAGATTCGTGCTGCT 122577 Query 74261 GAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGA 74320 ||||| ||||| |||||||| ||||||||||| ||| ||||||||||||||||||| | Sbjct 122578 GAAGATCCAGAATTTGAAACTTTCTACACTAAAAACCTTCTTCTTAATGAAGGTATCCGT 122637 Query 74321 GCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTG 74380 || |||||| | | || || || || || ||| || |||||||||||||| || Sbjct 122638 GCTTGGATGGCTGCACAAGACCAGCCACACGAACGCTTAGTATTCCCAGAAGAAGTATTA 122697 Query 74381 CCACGAGGCAACGCACTATAAAT 74403 || || || ||||| |||||||| Sbjct 122698 CCTCGTGGTAACGCTCTATAAAT 122720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572825478617600