Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2396 86.0 6e-12 >seq2396 Length=9575 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 24805 AGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAG 24864 ||| || ||||| || || || ||| ||||||| ||||| || ||||||||||| | Sbjct 166 AGGCATCCCTCCGGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCG 107 Query 24865 AAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCG 24924 | | || | || || ||||| || ||||| ||||| || ||| ||||| |||| |||| Sbjct 106 CACCCTGGCTGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGCCTGCG 47 Query 24925 CGGAGGC 24931 ||| ||| Sbjct 46 CGGTGGC 40 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 24805 AGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAG 24864 ||| || || || || || || ||| ||||||||||||| || ||||||||||| | Sbjct 680 AGGCATCCCCCCGGACCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCG 621 Query 24865 AAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCG 24924 | | || | || || ||||| || ||||| ||||| || ||| ||||| |||| |||| Sbjct 620 CACCCTGGCCGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGCCTGCG 561 Query 24925 CGGAGGC 24931 ||| ||| Sbjct 560 CGGTGGC 554 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 24805 AGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAG 24864 ||| || || || || || || ||| ||||||||||||| || ||||||||||| | Sbjct 1138 AGGCATCCCCCCGGACCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCG 1079 Query 24865 AAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCG 24924 | | || | || || ||||| || ||||| ||||| || ||| ||||| |||| |||| Sbjct 1078 CACCCTGGCCGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGCCTGCG 1019 Query 24925 CGGAGGC 24931 ||| ||| Sbjct 1018 CGGTGGC 1012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449859808601600