Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq6716 145 1e-28 seq3912 145 1e-28 seq16 141 1e-27 seq2517 129 9e-24 seq1025 104 4e-16 seq2535 95.1 2e-13 seq5134 87.8 3e-11 >seq6716 Length=19574 Score = 145 bits (160), Expect = 1e-28 Identities = 116/140 (83%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| || ||||| | |||||| |||| |||||| |||||||||||||||||| Sbjct 10553 CCCTCGTCACGGCTGATGAGCTCGTTGGAAAAGGTGAGGCCCGGCATGAGGCCGCGCTTC 10612 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 ||||||||||||||||| ||||| ||||| ||| |||||||||||||| ||||| || Sbjct 10613 TTGAGCCAAAAGATGGCGCAGAAGCTGCCGCTGAAGAAGATGCCCTCGACTGCGGCGTAG 10672 Query 794461 CCGACGAGCCGCTCGGCAAA 794480 | || ||||||||||| || Sbjct 10673 GCCACCAGCCGCTCGGCGAA 10692 Score = 113 bits (124), Expect = 7e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| || ||||| | |||||| ||| |||||| |||||||||||||||||| Sbjct 5375 CCCTCGTCACGGCTGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCGCGCTTC 5434 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| |||||||| ||||| ||||| || | ||||||||| || || | || Sbjct 5435 TTGAGCCAGAAGATGGCGCAGAAGCTGCCGCTAAAGAGGATGCCCTCCACAGCCGTGTAG 5494 Query 794461 CCGACGAGCCGCTCGGCAAA 794480 | || ||||||||||| || Sbjct 5495 GCCACAAGCCGCTCGGCGAA 5514 Score = 109 bits (120), Expect = 9e-18 Identities = 83/98 (85%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 ||||||||||| |||||||| |||||||| || | || || ||||| ||| ||||||| Sbjct 5911 TTGATCCACTTGATCGCCCAGTCTGCCTTCTTGGTGACGGATGGCACAGTGCTGATGGCG 5970 Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTA 794597 ||||| ||| |||||||||| ||||||||||||| ||| Sbjct 5971 CGAAACAGGCGGTCCTTCTCTACCGGGTCCTTGATGTA 6008 Score = 109 bits (120), Expect = 9e-18 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 793925 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGC 793984 ||| || ||||||||||| || || ||||| ||||||||| || |||||| Sbjct 9762 CTCAAAGAAGTTGGTCTTCCCGGGCAGGCTGATCAGCTCCATCCAGTCAAAGGGGTTGTG 9821 Query 793985 CGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAAT 794044 | |||||||||||||||||| |||| | |||||||||||||||| ||| | ||||| Sbjct 9822 CACTTTGTAGTGCTTCTCGCACCCCAGCGCCACAAGCAGGCGGTCGGCCACGTACTCAAT 9881 Query 794045 GTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGG 794089 |||||| |||||| | | |||||||| || || |||| || Sbjct 9882 GTACTGCGCCATGAGCGGCCCATTCATGCCAATCAGGTCCACCGG 9926 Score = 105 bits (116), Expect = 1e-16 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 793925 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGC 793984 |||||| ||||||||||| || || ||| | ||||||||| || |||||| Sbjct 4597 CTCGAAGAAGTTGGTCTTCCCAGGCAGGCTGATGAGCTCCATCCAGTCAAAGGGGTTGTG 4656 Query 793985 CGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAAT 794044 | |||||||||||||||||| || | | |||||||||||||||||| | || || Sbjct 4657 CACTTTGTAGTGCTTCTCGCACCCCAGTTCCACCAGCAGGCGGTCGGCGACGTACTCGAT 4716 Query 794045 GTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACT 794097 |||||| |||||| | ||||||||| || ||| | || ||||| |||| Sbjct 4717 GTACTGAGTCATGAGCTTGCTGTTCATGCCAATCAGCTCAACCGGCAGGGACT 4769 Score = 105 bits (116), Expect = 1e-16 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 796151 CCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGT 796210 |||| || | || |||||||||| || || | ||||||| || |||||||||| Sbjct 12017 CCTCTGGGGCCTGCACCTCCTTCAGAAACCGCGCCCCCAGGTTTTCCAAGACGATGCCGT 12076 Query 796211 CGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGCG 796270 || ||||||||| || || || || ||| ||| ||||| |||||| ||||| |||| Sbjct 12077 CGGAGGCGGCGAAGAACGCCAGCACATGCAGGATGAAGTGGCGCTCGCCGTCGTTGAGGC 12136 Query 796271 AGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGC 796313 ||||||| | ||||| | ||||||||||| |||||||| Sbjct 12137 TCGTCCAGTGGCGCATGTCGTCCCCGAGGTCGACTTCCTCGGC 12179 Score = 96.9 bits (106), Expect = 5e-14 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 796151 CCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGT 796210 |||| || | ||||| || |||| |||||| | ||| |||||| ||| ||||||| Sbjct 6866 CCTCTGGGATCTGGACGTCGTTCAAGAAGCGCGCCCCCACGTTCTCCAGCACAATGCCGT 6925 Query 796211 CGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGCG 796270 | |||||| || |||| ||||| || ||| ||||| |||||| | ||| |||| Sbjct 6926 CAGAGGCGGCAAAGTAGGCCAGGACCCGCAGGATGAAGTGGCGCTCGCCATCGTTGAGGC 6985 Query 796271 AGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGC 796313 |||||||||| | |||| | | ||||| ||||||||||| Sbjct 6986 CGACCCAGTGGCGCATGTCATCCGCCAGGTCCACCTCCTCGGC 7028 Score = 96.9 bits (106), Expect = 5e-14 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 ||||||||||| |||||||| || ||||| ||| | ||| ||||| ||| ||||||| Sbjct 11104 TTGATCCACTTGATCGCCCAGTCGGCCTTCTTCTTAACCACCGGCACGGTGCTGATGGCG 11163 Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGA 794605 | || ||| |||| ||||| || |||||||||| ||||| ||||| Sbjct 11164 TGGAATAGGCGGTCTTTCTCCACGGGGTCCTTGATGTAGGCGTCGA 11209 >seq3912 Length=5383 Score = 145 bits (160), Expect = 1e-28 Identities = 134/170 (79%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 2073553 CGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGACTCGCCGTTGGTG 2073612 ||||| |||||||| || ||||| ||||||||||| | ||||||||| ||||||||| Sbjct 1347 CGCGCGGTGTCGTTGAACACGCGCAGCATGGGCACGATGCCGTTGGAGGTTCCGTTGGTG 1406 Query 2073613 CCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCGATGCCGCCGGCC 2073672 || | ||||| ||||| |||||| | ||||| | | ||||||||||||||| Sbjct 1407 CCGCGGATGTAGGAGCCCGTGGCGCGGATGTTGTGGATCGACACGCCGATGCCGCCGGCG 1466 Query 2073673 GCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCGAT 2073722 ||||||||||| ||||||| ||||| || ||||||||||||||||| Sbjct 1467 CTCTTGGAGATGACGGCGCACTCCTTCAGGGTGTCGTAGATGCCCTCGAT 1516 Score = 127 bits (140), Expect = 3e-23 Identities = 120/153 (78%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 2071860 CATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTT 2071919 ||| || |||||| |||| ||| ||||||| || || ||||| || ||||||||| Sbjct 944 CATGAAGAGGTCGTTGATCCAGAGGGCGTAAAACAGGTCACGCGCGCGCGCCTCCTCCTT 1003 Query 2071920 GCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTA 2071979 ||||||||||| ||| |||| |||| | | ||| |||||||| ||||||||||| Sbjct 1004 CCCGTGGTTCTTGCGCAGCTCGATGAAGTCAAACACGTCCGCGTGCCAGGGCTCCAGGTA 1063 Query 2071980 GCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 | ||||| ||||||||||||||||||||||| Sbjct 1064 GATCGCAAACGCGCCCTTGCGCTTGCCGCCGCC 1096 >seq16 Length=68677 Score = 141 bits (156), Expect = 1e-27 Identities = 305/445 (69%), Gaps = 26/445 (6%) Strand=Plus/Minus Query 122651 CCCATCAAGGGCACGGCGCGTCGCGGGGC---GAC-ACCCAGC-GAGGACGCTGCGCTGG 122705 |||||||||||||| || | ||||| || ||| |||| || | ||||| ||||| | Sbjct 33684 CCCATCAAGGGCACCGCCC--CGCGGCGCCCCGACGACCCCGCCGCCGACGCCGCGCTCG 33627 Query 122706 CCGCCGAGTTGGCCGCGTGTCCCAAAACCTTTGCCGAGAACCTCATGATCGTCGACCTGG 122765 | || | | |||| | ||| || || ||||||||||||||||||||||| Sbjct 33626 CGGCGGCGCTGGCGGGGTGCGAGAAGGAGCGGGCGGAGAACCTCATGATCGTCGACCTCT 33567 Query 122766 TGCGCAACGACCTGAGC-GTGTGCTGCGCGCCCGGCAGCGTCGTCGTACCGCCAGGTCGC 122824 ||||||||||||| || | ||| |||| |||||||||||| ||| ||| || Sbjct 33566 TGCGCAACGACCTCGGCCGCGTG-TGCGAGCCCGGCAGCGTGCACGTCCCG------GGC 33514 Query 122825 CTCATGGCGATCGAGACCTATGCCGCCGTGCACCAGATGGTGACCACCGTCGACGCCCT- 122883 || || | | ||||| |||| ||| | || |||||| | || |||| ||| || ||| Sbjct 33513 CTGATCGAGCTCGAGTCCTACGCCACAGTCCACCAGCTCGTCTCCACGGTCCGCGGCCTC 33454 Query 122884 -GTTGGATCGGCACAGGACGGCGC--TGGACCTCGTGCGTGCGGCCTTTCCGCCGGGCTC 122940 | | |||| | |||||| | | | || ||| || || || ||| ||| Sbjct 33453 CGCCGTGCCGGC----GTCGGCGCCGTCGCCGCCGCGCGCGCCGCATTCCCGGGCGGCAG 33398 Query 122941 GATGACGGGTGCGCCCAAAGCGCGCAGCATGGACATTTTGGATCGCCTCGAAGAGCACCG 123000 ||||| || |||||||| | ||||||||||| ||| |||| || | || || | Sbjct 33397 CATGACTGGGGCGCCCAAGGTGCGCAGCATGGCCATCCTGGA-CGATCTGGAGGGCGC-- 33341 Query 123001 TCCGCGCGGAATCTATTCGGGCGCACTCGGGTTCTTTTCGGCCGACGGCGCCTGCTCGCT 123060 |||||||| | || |||||| | ||||| ||||| |||| | ||||| | | || Sbjct 33340 GCCGCGCGGCGTGTACTCGGGCTCCCTCGGCTTCTTCTCGGTCAACGGCACGTTTGACCT 33281 Query 123061 GTCGGTGGTAATCCGCACGGCCGTC 123085 | | || |||||||| |||||| Sbjct 33280 GAACATCGTGATCCGCACCGCCGTC 33256 >seq2517 Length=9782 Score = 129 bits (142), Expect = 9e-24 Identities = 109/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || |||||||| ||||| | |||||| ||| |||||| |||||||||||||||||| Sbjct 4614 CCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCGCGCTTC 4555 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| |||||||| ||||| ||||| ||| |||||||||||||| ||||| || Sbjct 4554 TTGAGCCAGAAGATGGCGCAGAAGCTGCCGCTGAAGAAGATGCCCTCGACCGCGGCGTAG 4495 Query 794461 CCGACGAGCCGCTC 794474 | || || ||||| Sbjct 4494 GCCACAAGGCGCTC 4481 Score = 118 bits (130), Expect = 2e-20 Identities = 124/163 (76%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 796151 CCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGT 796210 |||| || || ||||||||||| | ||||| | |||||||||| |||||||||| Sbjct 2837 CCTCTGGGACCTGGACCTCCTTGAGAAAGCGCGCCCCCAGGTTCTCCAGGACGATGCCGT 2778 Query 796211 CGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGCG 796270 || |||||||| || ||||| |||||| ||| ||||| ||||||||| | ||| Sbjct 2777 CGGAAGCGGCGAAGAACGCGAGCACGTGCAGGATGAAGTGGCGCTCGTCGCCCGACAGCT 2718 Query 796271 AGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGC 796313 ||||||| | ||||| |||| ||||||||||||||||| Sbjct 2717 TCTCCCAGTGCCGCATGTCGTCGCCCAGGTCGACCTCCTCGGC 2675 Score = 118 bits (130), Expect = 2e-20 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 793925 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGC 793984 ||| || |||||||||||||| | ||| ||| | ||||||||| || |||||||| Sbjct 5571 CTCAAAGAAGTTGGTCTTGCCGTTGAGGCTGATGAGCTCCATCCAGTCAAAGGGGTTGGC 5512 Query 793985 CGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAAT 794044 | |||| ||||||||||| || || | | | |||||||||||||| || || || || Sbjct 5511 GCTGTGGTACTGCTTCTCGCAGCCCAGGGCCACCAGCAGGCGGTCGGCCACAAACTCGAT 5452 Query 794045 GTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAG 794092 |||||| ||| || | ||||||||||||| || | |||||||| Sbjct 5451 GTACTGCGCCATCAGCTTGCCGTTCATGCCGATCAGGTCGACGGGCAG 5404 >seq1025 Length=17526 Score = 104 bits (114), Expect = 4e-16 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| || ||||| | |||||||| || ||| || ||||||||||| |||||| Sbjct 16437 CCCTCGTCCCGGCTGATGAGCTCGTTGCTGAACGTGAGCCCTGGCATGAGGCCACGCTTC 16496 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||| |||||| ||||| ||||| ||||| ||| ||||||||||||| ||||| Sbjct 16497 TTGATCCAAAATATGGCGCAGAAGCTGCCGCTGAAGTGGATGCCCTCGACGCACGCAAAC 16556 Query 794461 CCGACGAGCCGCTCGGCAAA 794480 | | ||||||| ||||| Sbjct 16557 GCCAGCAGCCGCTGCGCAAA 16576 >seq2535 Length=8865 Score = 95.1 bits (104), Expect = 2e-13 Identities = 134/187 (72%), Gaps = 6/187 (3%) Strand=Plus/Plus Query 796169 CCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGG 796228 || ||||||| || | |||||||||| ||| ||||| || ||||||||| |||| Sbjct 1413 CCGTCATGAACCGCGCCCCCAGGTTCTCCAGCACAATGCCATCAGAGGCGGCGAAGAAGG 1472 Query 796229 CGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGCGAGACCCAGTGGACCGTG- 796287 | || |||| ||||| ||| | |||| | || | ||| | |||||| || || Sbjct 1473 CCAGCACGTACTTGACAAACCGCTGCTCCCCCTCCGTCAGCTTGGCCCAGT---CCCTGA 1529 Query 796288 --TCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACA 796345 ||| | || ||||||||||| ||| ||||||| ||| ||| |||| ||||||| Sbjct 1530 AGTCGCCCCCCAGGTCGACCTCGTCGACGGTCCAGAAGCTGGCGAGCGCCTGCTTGTACA 1589 Query 796346 TCTCCCA 796352 ||||||| Sbjct 1590 TCTCCCA 1596 >seq5134 Length=3537 Score = 87.8 bits (96), Expect = 3e-11 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 429051 GGCGTCGTGGAGCGATTCAAGGGCAAGGAGGGCCGGATCCGCGGCAATTGCATGGGCAAG 429110 ||| ||||| |||| ||||||||||| |||| ||| |||||||||| || |||||| Sbjct 483 GGCTTCGTGCAGCGCCTCAAGGGCAAGCAGGGGCGGTTCCGCGGCAACCTCAGCGGCAAG 542 Query 429111 CGCGTCAACTTTACGGCGCGCGCCGTCATCAGTCCCGACCC 429151 ||||| |||| | |||||| | |||||||| || ||||| Sbjct 543 CGCGTGGACTTCAGCGCGCGCACGGTCATCAGCCCAGACCC 583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915531562950080