Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1067 93.3 3e-14 seq2396 89.7 3e-13 seq2272 84.2 1e-11 >seq1067 Length=17102 Score = 93.3 bits (102), Expect = 3e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||| ||||||||||||||| ||||| | || |||| |||| Sbjct 11657 CAGCACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCCAGAGTGCGGCCATC 11598 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 ||||| ||||| || ||||||||||| || |||||||| Sbjct 11597 CTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTC 11559 Score = 89.7 bits (98), Expect = 3e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||| ||||||||| ||||| ||||| | ||| |||| | || Sbjct 10728 CAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTC 10669 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 ||||| ||||| || ||||||||||| || |||||||| Sbjct 10668 CTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTC 10630 Score = 89.7 bits (98), Expect = 3e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | ||| ||||||||| ||||| ||||| | ||| |||| |||| Sbjct 11202 CAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATC 11143 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 ||||| ||||| || ||||||||||| || |||||||| Sbjct 11142 CTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTC 11104 Score = 84.2 bits (92), Expect = 1e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||| ||||||||| ||||| || || | ||| |||| | || Sbjct 10199 CAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCCAGGGTGCGGCCGTC 10140 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 ||||| ||||| || ||||||||||| || |||||||| Sbjct 10139 CTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTC 10101 Score = 84.2 bits (92), Expect = 1e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||| ||||||||| || || ||||| | ||| |||| | || Sbjct 12194 CAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGCCAGGGTGCGGCCGTC 12135 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 ||||| ||||| || ||||||||||| || |||||||| Sbjct 12134 CTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTC 12096 >seq2396 Length=9575 Score = 89.7 bits (98), Expect = 3e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | ||| ||||||||| ||||| ||||| | ||| |||| | || Sbjct 55 CAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTC 114 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 ||||| ||||| |||||||||||||| || |||||||| Sbjct 115 CTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 153 >seq2272 Length=9786 Score = 84.2 bits (92), Expect = 1e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | || ||||||||||||||| ||||| | ||| |||| |||| Sbjct 5257 CAGCACCAAGTGCAGCGTTGACTCCTTCTGAATGTTGTAGTCAGCCAGGGTGCGGCCATC 5316 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 ||||| ||||| || ||||||||||| || |||||||| Sbjct 5317 CTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTC 5355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325666125759680