Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq2396 84.2 2e-11 seq2272 84.2 2e-11 >seq2396 Length=9575 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 107657 AGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAA 107716 |||| | ||| ||| |||||| | || || | ||| || || ||||||||||||| | Sbjct 680 AGGCATCCCCCCGGACCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCG 621 Query 107717 AACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCG 107776 || |||| ||||||||||| || |||||||| || ||||| ||||| || | |||| Sbjct 620 CACCCTGGCCGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGCCTGCG 561 Query 107777 Aggggg 107782 || || Sbjct 560 CGGTGG 555 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 107657 AGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAA 107716 |||| | ||| ||| |||||| | || || | ||| || || ||||||||||||| | Sbjct 1138 AGGCATCCCCCCGGACCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCG 1079 Query 107717 AACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCG 107776 || |||| ||||||||||| || |||||||| || ||||| ||||| || | |||| Sbjct 1078 CACCCTGGCCGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGCCTGCG 1019 Query 107777 Aggggg 107782 || || Sbjct 1018 CGGTGG 1013 >seq2272 Length=9786 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 107669 GGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGA 107728 ||| |||||| | || || | ||||| || ||||||||||| | | || |||| || Sbjct 5356 GGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCTGA 5297 Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAggggg 107782 |||||||||||| |||||||| ||| ||||| ||||| || | |||| || || Sbjct 5296 CTACAACATTCAGAAGGAGTCAACGCTGCACTTGGTGCTGCGCCTGCGCGGTGG 5243 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 107657 AGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAA 107716 |||| | ||| ||| |||||| | || || | |||||| || ||||||||||||| | Sbjct 5878 AGGCATTCCCCCGGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTGGAGGACGGCCG 5819 Query 107717 AACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCG 107776 || |||| || |||||||| || |||||||| ||| | ||| ||||| || | |||| Sbjct 5818 CACCCTGGCCGATTACAACATCCAGAAGGAGTCCACGCTCCACCTGGTGCTGCGCCTGCG 5759 Query 107777 Aggggg 107782 || || Sbjct 5758 CGGTGG 5753 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 107669 GGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGA 107728 ||| |||||| | || || | ||| || || ||||||||||||| | || |||| || Sbjct 6365 GGACCAGCAGCGCCTGATCTTTGCAGGCAAGCAGCTGGAGGACGGCCGCACCCTGGCTGA 6306 Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAggggg 107782 ||||||||| || |||||||| ||| ||||| ||||| || | |||| || || Sbjct 6305 CTACAACATCCAGAAGGAGTCCACGCTGCACTTGGTGCTGCGCCTGCGCGGTGG 6252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398844131990080