Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq6720 782 0.0 >seq6720 Length=135362 Score = 782 bits (866), Expect = 0.0 Identities = 774/998 (78%), Gaps = 10/998 (1%) Strand=Plus/Minus Query 157051 TTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTT 157110 || || |||||| | ||||| || | |||||||| || | ||||||||||||||| | Sbjct 37394 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 37335 Query 157111 ATGATTCCAACATTGCTTG----CAGCAACTATCTGC-TTCATTGTTGCATTCGTAGCAG 157165 ||||| || |||||| |||| || ||||| |||||| | | ||| | |||| Sbjct 37334 ATGATCCC----TTGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAG 37280 Query 157166 CACCTCCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCA 157225 | ||||| || |||||||| ||||| || || |||||| |||||||| | | || || | Sbjct 37279 CTCCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTA 37220 Query 157226 ACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACC 157285 ||||||||||||||||||| || | ||| | || ||||||||||||||||||||||||| Sbjct 37219 ACAACATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACC 37160 Query 157286 CCATCTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGG 157345 | || |||||||| || || | || |||||| | |||||||||||||||| |||| | Sbjct 37159 CAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAA 37100 Query 157346 TAGTCTTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTT 157405 | || | |||||| | | || | | || ||||| ||||||||||||||||||| Sbjct 37099 TCGTTTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTT 37040 Query 157406 ACCGTTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGA 157465 |||||||||||||||| || |||||||||||||| ||||| || ||||| |||||||| | Sbjct 37039 ACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAA 36980 Query 157466 GTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTG 157525 |||||||||| | |||| || |||| |||||||||||||| |||| ||||||| | | Sbjct 36979 CTGCAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAG 36920 Query 157526 GTATCTCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGC 157585 |||||||||||||||| |||| ||| |||| ||||| || |||||||| ||| | |||| Sbjct 36919 GTATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGC 36860 Query 157586 ATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGC 157645 | || ||||||||| | || |||||||| ||||| ||||| || || ||||| ||||||| Sbjct 36859 ACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGC 36800 Query 157646 ACGGAAGTCTCGTTACTTCCTCGCTTGTTCGTGAAACAACTGAAACAGAGTCACAGAACT 157705 |||| | || ||||| || | | |||||||| ||||||| || || ||| Sbjct 36799 ACGGTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACG 36740 Query 157706 ATGGTTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACACGGTTACT 157765 | |||||||| || ||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 36739 AAGGTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACT 36680 Query 157766 TCGGTCGCCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTTCACTTCTTCC 157825 | ||||| | |||||||||||||| |||||||||||| | | ||||||||| Sbjct 36679 TTGGTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCT 36620 Query 157826 TCGCCGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCAT 157885 | || || ||||| || || |||| ||||||||||| | || || || ||||||| Sbjct 36619 TAGCTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCAT 36560 Query 157886 TCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGA 157945 ||||| | ||||| |||||||||||||| || | ||||| || |||||||| || | Sbjct 36559 TCAACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAA 36500 Query 157946 ACACCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTA 158005 |||| ||||| || || | ||||| ||| | ||||||||||| ||||| || |||| Sbjct 36499 ACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTA 36440 Query 158006 ACGCACACAACTTCCCACTGGATCTTGCTGCTGCAGAA 158043 |||| |||||||||||| | || | ||| ||| |||| Sbjct 36439 ACGCTCACAACTTCCCATTAGACTTAGCTTCTGTAGAA 36402 Score = 782 bits (866), Expect = 0.0 Identities = 774/998 (78%), Gaps = 10/998 (1%) Strand=Plus/Plus Query 157051 TTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTT 157110 || || |||||| | ||||| || | |||||||| || | ||||||||||||||| | Sbjct 108254 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 108313 Query 157111 ATGATTCCAACATTGCTTG----CAGCAACTATCTGC-TTCATTGTTGCATTCGTAGCAG 157165 ||||| || |||||| |||| || ||||| |||||| | | ||| | |||| Sbjct 108314 ATGATCCC----TTGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAG 108368 Query 157166 CACCTCCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCA 157225 | ||||| || |||||||| ||||| || || |||||| |||||||| | | || || | Sbjct 108369 CTCCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTA 108428 Query 157226 ACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACC 157285 ||||||||||||||||||| || | ||| | || ||||||||||||||||||||||||| Sbjct 108429 ACAACATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACC 108488 Query 157286 CCATCTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGG 157345 | || |||||||| || || | || |||||| | |||||||||||||||| |||| | Sbjct 108489 CAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAA 108548 Query 157346 TAGTCTTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTT 157405 | || | |||||| | | || | | || ||||| ||||||||||||||||||| Sbjct 108549 TCGTTTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTT 108608 Query 157406 ACCGTTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGA 157465 |||||||||||||||| || |||||||||||||| ||||| || ||||| |||||||| | Sbjct 108609 ACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAA 108668 Query 157466 GTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTG 157525 |||||||||| | |||| || |||| |||||||||||||| |||| ||||||| | | Sbjct 108669 CTGCAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAG 108728 Query 157526 GTATCTCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGC 157585 |||||||||||||||| |||| ||| |||| ||||| || |||||||| ||| | |||| Sbjct 108729 GTATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGC 108788 Query 157586 ATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGC 157645 | || ||||||||| | || |||||||| ||||| ||||| || || ||||| ||||||| Sbjct 108789 ACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGC 108848 Query 157646 ACGGAAGTCTCGTTACTTCCTCGCTTGTTCGTGAAACAACTGAAACAGAGTCACAGAACT 157705 |||| | || ||||| || | | |||||||| ||||||| || || ||| Sbjct 108849 ACGGTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACG 108908 Query 157706 ATGGTTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACACGGTTACT 157765 | |||||||| || ||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 108909 AAGGTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACT 108968 Query 157766 TCGGTCGCCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTTCACTTCTTCC 157825 | ||||| | |||||||||||||| |||||||||||| | | ||||||||| Sbjct 108969 TTGGTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCT 109028 Query 157826 TCGCCGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCAT 157885 | || || ||||| || || |||| ||||||||||| | || || || ||||||| Sbjct 109029 TAGCTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCAT 109088 Query 157886 TCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGA 157945 ||||| | ||||| |||||||||||||| || | ||||| || |||||||| || | Sbjct 109089 TCAACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAA 109148 Query 157946 ACACCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTA 158005 |||| ||||| || || | ||||| ||| | ||||||||||| ||||| || |||| Sbjct 109149 ACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTA 109208 Query 158006 ACGCACACAACTTCCCACTGGATCTTGCTGCTGCAGAA 158043 |||| |||||||||||| | || | ||| ||| |||| Sbjct 109209 ACGCTCACAACTTCCCATTAGACTTAGCTTCTGTAGAA 109246 Score = 551 bits (610), Expect = 6e-152 Identities = 715/985 (73%), Gaps = 10/985 (1%) Strand=Plus/Plus Query 158805 GATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTACCCACTGCTTATCTTGCT 158864 || ||||| |||||||| || ||||| || |||||| | |||| ||| ||| |||| Sbjct 121732 GACCGTTTTGTTTTTGTAGGTTGGTCAGGTCTTCTTTTATTACCTTGTGCGTATTTTGCA 121791 Query 158865 ATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACACATGGACTCGCT 158924 | || |||||| ||||||| || || || | ||| ||||| |||||||| | || Sbjct 121792 TTAGGTGGTTGGTTTACTGGGACAACATTTGTTACTTCTTGGTACACACATGGTTTAGCA 121851 Query 158925 ACTTCCTATCTTGAGGGTGCAAACTTTCTTACAGCAGCAGTTTCGACTCCAGCTGATGCT 158984 ||||| || | || ||| ||||| | || || ||||||||||||||||| | | Sbjct 121852 ACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCAGTTTCGACTCCAGCAAACAGT 121911 Query 158985 ATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGG 159044 |||| ||||||| | | || | ||||| ||||| |||||||| || || || || | Sbjct 121912 ATGGCTCATTCTTTATTATTTATTTGGGGACCTGAAGCTCAAGGTGACTTTA-CACGTTG 121970 Query 159045 GTC-CAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGTGCCTTTGCCCTAATTGG 159103 || ||| | || || | |||| |||||| || || || ||||| |||| ||||||| Sbjct 121971 GTGTCAATTAGGTGGTTTATGGACTTTTGTAGCACTGCATGGTGCTTTTGGTTTAATTGG 122030 Query 159104 TTTCATGCTTCGCCAGTTTGAACTGGCACGTCTCATCGGTA----TCCGTCCCTACAATG 159159 ||| ||| | || || |||||| | |||||| || ||| | ||||| || || | Sbjct 122031 TTTTATGTTACGTCAATTTGAAATTGCACGT----TCAGTAAACTTACGTCCATATAACG 122086 Query 159160 CTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCACTTG 159219 | ||||| ||||||| || |||||||| ||||| || || | || ||||| | | Sbjct 122087 CAATTGCTTTCTCTGCACCAATTGCTGTATTTGTTTCTGTATTTTTAATTTACCCTTTAG 122146 Query 159220 GTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCCGCAATATTCAGGTTCCTAC 159279 |||| || ||||||| ||||| || ||||| || ||||| || ||| | || | Sbjct 122147 GTCAATCTGGTTGGTTCTTCGCCCCTAGTTTTGGTGTTGCCGCTATTTTCCGTTTTATCT 122206 Query 159280 TCTTCCTACAAGGGTTCCACAATTGGACACTAAACCCCTTCCATATGATGGGAGTTGCTG 159339 | ||| | ||||| |||||||| |||||||| ||||| ||||| |||||||||||||||| Sbjct 122207 TATTCTTCCAAGGTTTCCACAACTGGACACTTAACCCATTCCACATGATGGGAGTTGCTG 122266 Query 159340 GTATCCTAGGTGGAGCACTTCTATCTGCTATTCATGGGGTCACAGTTGAAAATACATTAT 159399 || | |||||| || || ||| |||||||||||| | ||||| |||||||| | | Sbjct 122267 GTGTTTTAGGTGCGGCTCTATTATGTGCTATTCATGGTGCTACAGTAGAAAATACTCTTT 122326 Query 159400 ACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGA 159459 ||| ||||| || || ||||| || || ||| | | || |||| || || | Sbjct 122327 TCGAAGATGGTGATGGTGCTAACACATTCCGTGCATTTAACCCTACGCAAGCTGAAGAAA 122386 Query 159460 CTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTA 159519 |||| |||||||| || || || | |||||||| || || || || | || ||||| | Sbjct 122387 CTTACTCTATGGTAACAGCTAATAGATTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAA 122446 Query 159520 ACAAGCGGTGGCTTCATTTCTTTATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCA 159579 |||| || ||| | || ||||||||||| ||||| ||||| | ||||| |||| || Sbjct 122447 ACAAACGTTGGTTACACTTCTTTATGTTATTTGTTCCTGTGACAGGTCTTTGGATGTCTG 122506 Query 159580 GTATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGA 159639 |||||| || | ||| | ||||| || | ||||||||||| ||||| ||||||| Sbjct 122507 CTATTGGTGTTGTAGGTTTAGCTCTTAACTTACGTGCTTACGACTTCGTTTCACAAGAGA 122566 Query 159640 TCAGAGCAGCAGAAGATCCAGAATTTGAAACGTTCTACACCAAGAACATTCTTCTGAATG 159699 | | || || |||||||||||||||||||| |||||||| || ||| ||||||| |||| Sbjct 122567 TTCGTGCTGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAAACCTTCTTCTTAATG 122626 Query 159700 AAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTCATCTTCCCAG 159759 |||| | ||||||||| |||| | || || || || ||| ||| | ||||||| Sbjct 122627 AAGGTATCCGTGCTTGGATGGCTGCACAAGACCAGCCACACGAACGCTTAGTATTCCCAG 122686 Query 159760 AAGAAGTTCTACCAAGAGGTAACGC 159784 ||||||| |||| | |||||||| Sbjct 122687 AAGAAGTATTACCTCGTGGTAACGC 122711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545227797017600