Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq6720 682 0.0 >seq6720 Length=135362 Score = 682 bits (756), Expect = 0.0 Identities = 740/976 (76%), Gaps = 9/976 (1%) Strand=Plus/Minus Query 177558 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177617 || || |||||| | ||||| || | ||||| | || ||||||||||||| || | Sbjct 37394 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 37335 Query 177618 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCGTCGCTGCTCC 177676 ||||| || | || |||| || ||||| ||||| ||| |||| |||| ||||| Sbjct 37334 ATGATCCCTTGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAGCTCC 37276 Query 177677 CCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 177736 || || || ||||| || |||||||| || || ||||||| | | || |||||||| Sbjct 37275 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAA 37216 Query 177737 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 177796 ||||||||||||||| || | || | || |||||||| |||||||||||||| || || Sbjct 37215 CATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAAT 37156 Query 177797 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 177856 |||||||| || || | || |||||| | || ||||||||||||| |||| | | || Sbjct 37155 TTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 37096 Query 177857 CTTTCACTTCCTTATCGGCATCTATGCATAT---ATGGGACGTGAGTGGGAACTTTCATA 177913 | |||||| | | || | ||||| | ||||| ||||||||||||||||| || Sbjct 37095 TTGCCACTTCTTATTAGGTGT---TGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTA 37039 Query 177914 CCGTCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGCATC 177973 |||| |||||||||| || |||||||||||||| ||||| || || || || || ||| | Sbjct 37038 CCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAAC 36979 Query 177974 CGCAGTCTTTCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGG 178033 ||||| || || |||| || |||| |||||||| ||||| |||| ||||||| | || Sbjct 36978 TGCAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGG 36919 Query 178034 TATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCA 178093 ||||||||||||||| |||| |||| | ||||||||||| || ||||| || | ||||| Sbjct 36918 TATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCA 36859 Query 178094 CCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCA 178153 ||| ||||||||| | ||||||||||| ||||| ||||| || | ||||| |||||||| Sbjct 36858 CCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCA 36799 Query 178154 TGGAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGACAGAAACTGAGTCCCAGAACTA 178213 || | || ||||| || | ||||||| || || |||| || || ||| | Sbjct 36798 CGGTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGA 36739 Query 178214 TGGTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGCAGCCCATGGTTACTT 178273 |||||||| || || ||||||||||| || || |||||||| || || || |||||||| Sbjct 36738 AGGTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTT 36679 Query 178274 CGGTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTGCACTTCTTCCT 178333 |||||||| ||||||||||| ||||| ||||||||||| |||||| | ||||||||| | Sbjct 36678 TGGTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTT 36619 Query 178334 CGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCCACCATGGCATT 178393 || || ||||| ||| | | || |||||||| || | ||| |||| || |||||||| Sbjct 36618 AGCTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATT 36559 Query 178394 TAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAA 178453 ||| | || || |||||||||||||| || | | || |||||| ||||| | || Sbjct 36558 CAACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAA 36499 Query 178454 CACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAAAGAAA 178513 ||| ||||| ||| | |||||||||| | || |||||||| ||||||||| | || Sbjct 36498 CACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAA 36439 Query 178514 TAGCACATAACTTCCC 178529 || || |||||||| Sbjct 36438 -CGCTCACAACTTCCC 36424 Score = 682 bits (756), Expect = 0.0 Identities = 740/976 (76%), Gaps = 9/976 (1%) Strand=Plus/Plus Query 177558 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177617 || || |||||| | ||||| || | ||||| | || ||||||||||||| || | Sbjct 108254 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 108313 Query 177618 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCGTCGCTGCTCC 177676 ||||| || | || |||| || ||||| ||||| ||| |||| |||| ||||| Sbjct 108314 ATGATCCCTTGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAGCTCC 108372 Query 177677 CCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 177736 || || || ||||| || |||||||| || || ||||||| | | || |||||||| Sbjct 108373 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAA 108432 Query 177737 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 177796 ||||||||||||||| || | || | || |||||||| |||||||||||||| || || Sbjct 108433 CATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAAT 108492 Query 177797 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 177856 |||||||| || || | || |||||| | || ||||||||||||| |||| | | || Sbjct 108493 TTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 108552 Query 177857 CTTTCACTTCCTTATCGGCATCTATGCATAT---ATGGGACGTGAGTGGGAACTTTCATA 177913 | |||||| | | || | ||||| | ||||| ||||||||||||||||| || Sbjct 108553 TTGCCACTTCTTATTAGGTGT---TGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTA 108609 Query 177914 CCGTCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGCATC 177973 |||| |||||||||| || |||||||||||||| ||||| || || || || || ||| | Sbjct 108610 CCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAAC 108669 Query 177974 CGCAGTCTTTCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGG 178033 ||||| || || |||| || |||| |||||||| ||||| |||| ||||||| | || Sbjct 108670 TGCAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGG 108729 Query 178034 TATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCA 178093 ||||||||||||||| |||| |||| | ||||||||||| || ||||| || | ||||| Sbjct 108730 TATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCA 108789 Query 178094 CCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCA 178153 ||| ||||||||| | ||||||||||| ||||| ||||| || | ||||| |||||||| Sbjct 108790 CCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCA 108849 Query 178154 TGGAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGACAGAAACTGAGTCCCAGAACTA 178213 || | || ||||| || | ||||||| || || |||| || || ||| | Sbjct 108850 CGGTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGA 108909 Query 178214 TGGTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGCAGCCCATGGTTACTT 178273 |||||||| || || ||||||||||| || || |||||||| || || || |||||||| Sbjct 108910 AGGTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTT 108969 Query 178274 CGGTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTGCACTTCTTCCT 178333 |||||||| ||||||||||| ||||| ||||||||||| |||||| | ||||||||| | Sbjct 108970 TGGTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTT 109029 Query 178334 CGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCCACCATGGCATT 178393 || || ||||| ||| | | || |||||||| || | ||| |||| || |||||||| Sbjct 109030 AGCTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATT 109089 Query 178394 TAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAA 178453 ||| | || || |||||||||||||| || | | || |||||| ||||| | || Sbjct 109090 CAACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAA 109149 Query 178454 CACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAAAGAAA 178513 ||| ||||| ||| | |||||||||| | || |||||||| ||||||||| | || Sbjct 109150 CACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAA 109209 Query 178514 TAGCACATAACTTCCC 178529 || || |||||||| Sbjct 109210 -CGCTCACAACTTCCC 109224 Score = 562 bits (622), Expect = 4e-155 Identities = 730/1006 (73%), Gaps = 10/1006 (1%) Strand=Plus/Plus Query 178951 GATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTT 179010 ||||||||| | || || || ||||| ||||| |||||||| || || || | | Sbjct 121714 GATGACTGGTTACGTCAAGACCGTTTTGTTTTTGTAGGTTGGTCAGGTCTTCTTTTATTA 121773 Query 179011 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGG 179070 || ||| ||| |||| | || |||||| ||||||||||| | |||||||| |||| Sbjct 121774 CCTTGTGCGTATTTTGCATTAGGTGGTTGGTTTACTGGGACAACATTTGTTACTTCTTGG 121833 Query 179071 TACACCCATGGTCTTGCTAGTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTC 179130 ||||| |||||| | || | ||| || | |||||| |||||| | || || || || Sbjct 121834 TACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCAGTT 121893 Query 179131 TCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 179190 ||||| || || | ||||| ||||||| | | | ||||||| ||||| |||| Sbjct 121894 TCGACTCCAGCAAACAGTATGGCTCATTCTTTATTATTTATTTGGGGACCTGAAGCTCAA 121953 Query 179191 GG-GAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGG 179249 || || ||| || || ||||| ||| | || || |||||| ||| || || || || || Sbjct 121954 GGTGACTTTACA-CGTTGGTGTCAATTAGGTGGTTTATGGACTTTTGTAGCACTGCATGG 122012 Query 179250 TGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACGTCTCATCGGTA- 179308 ||| || | ||||||| || ||| | ||||| |||||| | |||||| || ||| Sbjct 122013 TGCTTTTGGTTTAATTGGTTTTATGTTACGTCAATTTGAAATTGCACGT----TCAGTAA 122068 Query 179309 ---TCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTAT 179365 | ||||| || || || |||||||| ||| || ||||| ||||| ||| ||||| Sbjct 122069 ACTTACGTCCATATAACGCAATTGCTTTCTCTGCACCAATTGCTGTATTTGTTTCTGTAT 122128 Query 179366 TTCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGG 179425 || | || ||||| | || ||||| |||||||||| || || ||||||||||| | Sbjct 122129 TTTTAATTTACCCTTTAGGTCAATCTGGTTGGTTCTTCGCCCCTAGTTTTGGTGTTGCCG 122188 Query 179426 CGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTC 179485 | || || | || | | ||||| ||||||||||||||||||||||| ||||| || | Sbjct 122189 CTATTTTCCGTTTTATCTTATTCTTCCAAGGTTTCCACAACTGGACACTTAACCCATTCC 122248 Query 179486 ACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAA 179545 |||||||||||||||| ||| | | |||| ||||| | | |||||||||||| | | Sbjct 122249 ACATGATGGGAGTTGCTGGTGTTTTAGGTGCGGCTCTATTATGTGCTATTCATGGTGCTA 122308 Query 179546 CTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACT 179605 | ||||| ||||| | | |||||||| || || |||||||| || || || Sbjct 122309 CAGTAGAAAATACTCTTTTCGAAGATGGTGATGGTGCTAACACATTCCGTGCATTTAACC 122368 Query 179606 CTACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCT 179665 ||||||||| || || || || |||||||| ||||| || | || ||||| || || | Sbjct 122369 CTACGCAAGCTGAAGAAACTTACTCTATGGTAACAGCTAATAGATTCTGGTCACAAATTT 122428 Query 179666 TCGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCA 179725 | || || | ||| || || |||||||| |||||||||| | | ||||||||||| | Sbjct 122429 TTGGTGTAGCTTTTTCAAACAAACGTTGGTTACACTTCTTTATGTTATTTGTTCCTGTGA 122488 Query 179726 TGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTATG 179785 ||||||||| | ||| ||||||| | | || |||||||||| | |||||||| | Sbjct 122489 CAGGTCTTTGGATGTCTGCTATTGGTGTTGTAGGTTTAGCTCTTAACTTACGTGCTTACG 122548 Query 179786 ATTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAA 179845 | || || |||||||| | || || |||||||| || || || || ||||| || | Sbjct 122549 ACTTCGTTTCACAAGAGATTCGTGCTGCTGAAGATCCAGAATTTGAAACTTTCTACACTA 122608 Query 179846 AGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACATG 179905 | ||| ||||||| |||||||| | ||||||||| |||| | || || ||||| | Sbjct 122609 AAAACCTTCTTCTTAATGAAGGTATCCGTGCTTGGATGGCTGCACAAGACCAGCCACACG 122668 Query 179906 AAAACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCACT 179951 || ||| | |||||||||||||| ||||| |||||||||| || Sbjct 122669 AACGCTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGCTCT 122714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605616323955200