Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3912 122 8e-23 seq6716 105 6e-18 seq2517 104 2e-17 seq1025 102 8e-17 seq1067 95.1 1e-14 seq2272 91.5 1e-13 >seq3912 Length=5383 Score = 122 bits (134), Expect = 8e-23 Identities = 103/127 (81%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 148821 GCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCG 148880 ||||| || || || |||||||| || ||||| || |||||| ||||||| || |||||| Sbjct 116 GCGATCGACGCCAGGTTGCACACCGCGGTCTCGTCGGGGGCGGTGTACTCCACAATCTCG 175 Query 148881 GCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCAC 148940 | |||||| ||| ||| ||||| ||||| ||||| ||||||||||||| ||||||| Sbjct 176 GTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGCTGATTGCTCTTGCGGTTGCAC 235 Query 148941 GCGTCCT 148947 | ||||| Sbjct 236 GAGTCCT 242 >seq6716 Length=19574 Score = 105 bits (116), Expect = 6e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 120633 GTAGTACAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCT 120692 |||| |||||| ||||||| ||||||||||||||||| || || ||||||||| Sbjct 10522 GTAGAGCAGGCAGCCAAAGTCGGTGTGCAGGCCCTCGTCACGGCTGATGAGCTCGTTGGA 10581 Query 120693 AAACGTCAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCC 120752 ||| || ||||| ||||||| ||| | |||||| | || |||||| |||||||| Sbjct 10582 AAAGGTGAGGCCCGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAGCTGCC 10641 Query 120753 CGAAAAGAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAA 120803 ||||| | |||||| || ||| |||| |||| |||||||| || Sbjct 10642 GCTGAAGAAGATGCCCTCGACTGCGGCGTAGGCCACCAGCCGCTCGGCGAA 10692 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 120633 GTAGTACAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCT 120692 |||| |||||| ||||||| ||||||||||||||||| || || ||||||||| Sbjct 5344 GTAGAGCAGGCAGCCAAAGTCGGTGTGCAGGCCCTCGTCACGGCTGATGAGCTCGTTGGA 5403 Query 120693 AAACGTCAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCC 120752 || || ||||| ||||||| ||| | |||||| |||| |||||| |||||||| Sbjct 5404 GAAGGTGAGGCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCC 5463 Query 120753 CGAAAAGAACACGCCCTCCAC 120773 ||||| | ||||||||| Sbjct 5464 GCTAAAGAGGATGCCCTCCAC 5484 >seq2517 Length=9782 Score = 104 bits (114), Expect = 2e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 120633 GTAGTACAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCT 120692 |||| |||||| ||||||| |||||||||||||||||||| || ||||||||| Sbjct 4645 GTAGAGCAGGCAGCCAAAGTCGGTGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGA 4586 Query 120693 AAACGTCAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCC 120752 || || ||||| ||||||| ||| | |||||| |||| |||||| |||||||| Sbjct 4585 GAAGGTGAGGCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCC 4526 Query 120753 CGAAAAGAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTC 120797 ||||| | |||||| || ||| |||| || | |||||| Sbjct 4525 GCTGAAGAAGATGCCCTCGACCGCGGCGTAGGCCACAAGGCGCTC 4481 >seq1025 Length=17526 Score = 102 bits (112), Expect = 8e-17 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 ||||| |||||||| |||||||| |||||||| || || ||||||||||| ||||| Sbjct 16413 AGGCAGGCAAAGTCTGTGTGCAGCCCCTCGTCCCGGCTGATGAGCTCGTTGCTGAACGTG 16472 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759 || || ||||||| ||| | ||||||| | ||||||||| |||||||| ||| Sbjct 16473 AGCCCTGGCATGAGGCCACGCTTCTTGATCCAAAATATGGCGCAGAAGCTGCCGCTGAAG 16532 Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCC 120810 | |||||| ||| ||||| || | || |||| || || | |||| Sbjct 16533 TGGATGCCCTCGACGCACGCAAACGCCAGCAGCCGCTGCGCAAAGGGCGCC 16583 >seq1067 Length=17102 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||||||| ||| ||| |||||| ||||||||||| Sbjct 10184 GGTGGACTCCTTCTGGATGTTGTAATCGGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCC 10125 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCT 133559 ||| | || || ||||||||||| |||||||||||| Sbjct 10124 AGCGAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCT 10088 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| |||||||| ||| ||| ||| |||||| ||||||||||| Sbjct 12179 GGTGGACTCCTTCTGGATATTGTAGTCGGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCC 12120 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCT 133559 ||| | || || ||||||||||| |||||||||||| Sbjct 12119 AGCGAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCT 12083 Score = 89.7 bits (98), Expect = 5e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| ||| ||| |||||| ||||||||||| Sbjct 10713 GGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCC 10654 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCT 133559 ||| | || || ||||||||||| |||||||||||| Sbjct 10653 AGCGAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCT 10617 Score = 89.7 bits (98), Expect = 5e-13 Identities = 80/98 (82%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| ||| ||| | | | ||||| |||||||||| Sbjct 11642 GGTGGACTCCTTCTGAATGTTGTAGTCGGCCAGAGTGCGGCCA-TCCTCCAGCTGCTTGC 11584 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCT 133559 | ||| | || || ||||||||||| |||||||||||| Sbjct 11583 CAGCGAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCT 11546 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/97 (80%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| ||| ||| | | | ||||| ||||||||||| Sbjct 11186 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA-TCCTCCAGCTGCTTGCC 11128 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCT 133559 ||| | || || ||||||||||| || ||||||||| Sbjct 11127 AGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCT 11091 >seq2272 Length=9786 Score = 91.5 bits (100), Expect = 1e-13 Identities = 80/97 (82%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| ||| ||| ||| |||||| ||||||||||| Sbjct 4774 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACC-GTCCTCCAGCTGCTTGCC 4832 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCT 133559 ||| | || || ||||||||||| |||||||||||| Sbjct 4833 CGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCT 4869 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||||||| ||| ||| |||||| |||||||||||| Sbjct 5783 GTGGACTCCTTCTGGATGTTGTAATCGGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCC 5842 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCT 133559 || | || || ||||||||||| || || |||||| Sbjct 5843 GCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCT 5878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483380192652800