Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq6720 609 7e-170 >seq6720 Length=135362 Score = 609 bits (674), Expect = 7e-170 Identities = 736/991 (74%), Gaps = 8/991 (1%) Strand=Plus/Minus Query 19496 TGGGAGCTTTTTACTAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTT 19555 |||| | |||| | | ||| ||||||| || | |||||| | || | || ||||| Sbjct 37403 TGGGCTCGTTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTC 37344 Query 19556 GGAACACTGATGATTCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCAT 19614 || | ||||| || || | | |||| || ||||| |||||||| | ||||| Sbjct 37343 GGTGTGTTAATGATCCCTTGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCAT 37285 Query 19615 TGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTT-T 19673 || ||||| ||||| || || ||||| ||||| || || || || ||| | || || | Sbjct 37284 CGCAGCTCCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTT-CTTTATTAT 37226 Query 19674 ATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGC-AATGCCATCGGACTACAC 19732 | || ||||||||||| || || || | | || | || | || || ||||| || ||| Sbjct 37225 ACGGTAACAACATCATCTCTGGTGCTATTATCCCTA-CATCTAACGCAATCGGTCTTCAC 37167 Query 19733 TTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTC 19792 ||||||||||||||||||||| ||| | || || ||| | |||||||| || || | | Sbjct 37166 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTAC 37107 Query 19793 CAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAA 19852 ||| | | || | ||||||| | | || | |||||||||| || ||||||||| Sbjct 37106 CAATTAATCGTTTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAA 37047 Query 19853 CTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCA 19912 ||| || || |||| ||| | |||||||| |||||||| ||||| ||||| || || Sbjct 37046 CTTTCTTACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCT 36987 Query 19913 GCCGCCTCTGCGGTCTTTCTCGTCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATG 19972 || || |||| || || | ||||||| | || || ||| ||||| |||| |||| Sbjct 36986 GCTGCAACTGCAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATG 36927 Query 19973 CCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATT 20032 ||||| |||||||| ||||| ||||||| |||| | ||||||||||| || || |||||| Sbjct 36926 CCTTTAGGTATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATT 36867 Query 20033 CTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGT 20092 | |||||||| ||||||||| | ||||| ||||||||||| ||||| ||| ||||| Sbjct 36866 TTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCA 36807 Query 20093 GCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGCGTGAGACTACTGAACAGGAAAGT 20152 || ||||||||||| | || || || || | | ||||| ||||||||| | ||| | Sbjct 36806 GCTATGCACGGTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCT 36747 Query 20153 CAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCAT 20212 ||| | |||||||| ||||| |||||||||||||| || ||||||||||| || || Sbjct 36746 GCTAACGAAGGTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACAC 36687 Query 20213 GGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACAC 20272 ||||||||||| ||||| |||||||||||||| || |||||||| ||||| ||||| Sbjct 36686 GGTTACTTTGGTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACAC 36627 Query 20273 TTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACA 20332 |||||| | ||||| |||||||| | | ||||||||| |||| || || | || || Sbjct 36626 TTCTTCTTAGCTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACT 36567 Query 20333 ATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACA-ACAATGGTCG 20391 ||||| || || | ||||| |||||||| ||||| || || | || |||| ||||| Sbjct 36566 ATGGCATTCAACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAA-GGTCG 36508 Query 20392 TGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCA 20451 ||| | | |||||||||||||| |||| |||||||| | || | || || ||||| Sbjct 36507 TGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCA 36448 Query 20452 TGAACGGAATGCTCATAACTTCCCACTTGAC 20482 ||||| || ||||| ||||||||| | ||| Sbjct 36447 CGAACGTAACGCTCACAACTTCCCATTAGAC 36417 Score = 609 bits (674), Expect = 7e-170 Identities = 736/991 (74%), Gaps = 8/991 (1%) Strand=Plus/Plus Query 19496 TGGGAGCTTTTTACTAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTT 19555 |||| | |||| | | ||| ||||||| || | |||||| | || | || ||||| Sbjct 108245 TGGGCTCGTTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTC 108304 Query 19556 GGAACACTGATGATTCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCAT 19614 || | ||||| || || | | |||| || ||||| |||||||| | ||||| Sbjct 108305 GGTGTGTTAATGATCCCTTGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCAT 108363 Query 19615 TGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTT-T 19673 || ||||| ||||| || || ||||| ||||| || || || || ||| | || || | Sbjct 108364 CGCAGCTCCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTT-CTTTATTAT 108422 Query 19674 ATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGC-AATGCCATCGGACTACAC 19732 | || ||||||||||| || || || | | || | || | || || ||||| || ||| Sbjct 108423 ACGGTAACAACATCATCTCTGGTGCTATTATCCCTA-CATCTAACGCAATCGGTCTTCAC 108481 Query 19733 TTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTC 19792 ||||||||||||||||||||| ||| | || || ||| | |||||||| || || | | Sbjct 108482 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTAC 108541 Query 19793 CAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAA 19852 ||| | | || | ||||||| | | || | |||||||||| || ||||||||| Sbjct 108542 CAATTAATCGTTTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAA 108601 Query 19853 CTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCA 19912 ||| || || |||| ||| | |||||||| |||||||| ||||| ||||| || || Sbjct 108602 CTTTCTTACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCT 108661 Query 19913 GCCGCCTCTGCGGTCTTTCTCGTCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATG 19972 || || |||| || || | ||||||| | || || ||| ||||| |||| |||| Sbjct 108662 GCTGCAACTGCAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATG 108721 Query 19973 CCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATT 20032 ||||| |||||||| ||||| ||||||| |||| | ||||||||||| || || |||||| Sbjct 108722 CCTTTAGGTATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATT 108781 Query 20033 CTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGT 20092 | |||||||| ||||||||| | ||||| ||||||||||| ||||| ||| ||||| Sbjct 108782 TTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCA 108841 Query 20093 GCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGCGTGAGACTACTGAACAGGAAAGT 20152 || ||||||||||| | || || || || | | ||||| ||||||||| | ||| | Sbjct 108842 GCTATGCACGGTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCT 108901 Query 20153 CAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCAT 20212 ||| | |||||||| ||||| |||||||||||||| || ||||||||||| || || Sbjct 108902 GCTAACGAAGGTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACAC 108961 Query 20213 GGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACAC 20272 ||||||||||| ||||| |||||||||||||| || |||||||| ||||| ||||| Sbjct 108962 GGTTACTTTGGTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACAC 109021 Query 20273 TTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACA 20332 |||||| | ||||| |||||||| | | ||||||||| |||| || || | || || Sbjct 109022 TTCTTCTTAGCTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACT 109081 Query 20333 ATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGA-CAACAATGGTCG 20391 ||||| || || | ||||| |||||||| ||||| || || | || |||| ||||| Sbjct 109082 ATGGCATTCAACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAA-GGTCG 109140 Query 20392 TGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCA 20451 ||| | | |||||||||||||| |||| |||||||| | || | || || ||||| Sbjct 109141 TGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCA 109200 Query 20452 TGAACGGAATGCTCATAACTTCCCACTTGAC 20482 ||||| || ||||| ||||||||| | ||| Sbjct 109201 CGAACGTAACGCTCACAACTTCCCATTAGAC 109231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148816923461760