Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq6720 580 3e-161 >seq6720 Length=135362 Score = 580 bits (642), Expect = 3e-161 Identities = 728/991 (73%), Gaps = 6/991 (1%) Strand=Plus/Minus Query 28617 TAACCCTTGGGAGCTTTTTACTAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGG 28676 || || ||||| | |||| | | ||| ||||||| || | |||||| | || | || Sbjct 37410 TAGCCTTTGGGCTCGTTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGG 37351 Query 28677 GTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTG 28735 ||||| || | ||||| || || | | |||| || ||||| |||||||| | Sbjct 37350 TTGGTTCGGTGTGTTAATGATCCCTTGCTTATTAACAGCTAC-ATCTGTATTCATTATCG 37292 Query 28736 CATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTC 28795 ||||| || || || ||||| || || ||||| ||||| || || || |||| | Sbjct 37291 GCTTCATCGCAGCTCCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTT 37232 Query 28796 TTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAGCAGC-AATGCCATCGGA 28854 | | || || ||||||||||| || || || | | || | || | || || ||||| Sbjct 37231 TATTATACGGTAACAACATCATCTCTGGTGCTATTATCCCTA-CATCTAACGCAATCGGT 37173 Query 28855 CTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGA 28914 || |||||||||||||||||||||||| ||| | || || ||| | |||||||| || Sbjct 37172 CTTCACTTCTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGT 37113 Query 28915 CCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAG 28974 || | |||| | | || | ||||||| | | || || |||||||||| || ||| Sbjct 37112 CCTTACCAATTAATCGTTTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAG 37053 Query 28975 TGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCC 29034 ||||||||| || || |||| ||| | || ||||| ||||| || ||||||||||| Sbjct 37052 TGGGAACTTTCTTACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCA 36993 Query 29035 GTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGAC 29094 || || || ||| |||| || ||| | |||||||| |||| ||||||||||| || Sbjct 36992 GTAGCTGCTGCAACTGCAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGAT 36933 Query 29095 GCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACAT 29154 | |||||||| ||||| || || || ||||||| |||| | || |||||||| || || Sbjct 36932 GGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCAC 36873 Query 29155 AACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTA 29214 |||||| | |||||||| ||||||||| | || |||||||| || || ||||| || || Sbjct 36872 AACATTTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTA 36813 Query 29215 TTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTGCGTGAGACGACTGAAGAC 29274 || || ||||||||||| | || || || || | | ||||| || |||||| || Sbjct 36812 TTCTCAGCTATGCACGGTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAAC 36753 Query 29275 ATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCC 29334 ||| ||| | |||||||| ||||| ||||||||||||||||| ||||||||||| Sbjct 36752 GAATCTGCTAACGAAGGTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCT 36693 Query 29335 GCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCT 29394 || |||||||||||||| ||||| ||||||||||| || || ||||| || ||||| Sbjct 36692 GCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCA 36633 Query 29395 CTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTT 29454 ||||||||||| | ||||| |||||||| | | ||||||||| |||| || || | Sbjct 36632 TTACACTTCTTCTTAGCTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTA 36573 Query 29455 TCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACA-ACAA 29513 || || ||||| || || | ||||| || ||||| ||||| || || | || |||| Sbjct 36572 TCAACTATGGCATTCAACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAA 36513 Query 29514 TGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGT 29573 |||||||| | || ||||||||||| | |||| || |||||| | || | ||||| Sbjct 36512 -GGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGT 36454 Query 29574 AATGCATGAGCGTAATGCTCATAACTTCCCA 29604 |||||| || ||||| ||||| ||||||||| Sbjct 36453 AATGCACGAACGTAACGCTCACAACTTCCCA 36423 Score = 580 bits (642), Expect = 3e-161 Identities = 728/991 (73%), Gaps = 6/991 (1%) Strand=Plus/Plus Query 28617 TAACCCTTGGGAGCTTTTTACTAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGG 28676 || || ||||| | |||| | | ||| ||||||| || | |||||| | || | || Sbjct 108238 TAGCCTTTGGGCTCGTTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGG 108297 Query 28677 GTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTG 28735 ||||| || | ||||| || || | | |||| || ||||| |||||||| | Sbjct 108298 TTGGTTCGGTGTGTTAATGATCCCTTGCTTATTAACAGCTAC-ATCTGTATTCATTATCG 108356 Query 28736 CATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTC 28795 ||||| || || || ||||| || || ||||| ||||| || || || |||| | Sbjct 108357 GCTTCATCGCAGCTCCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTT 108416 Query 28796 TTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAGCAGC-AATGCCATCGGA 28854 | | || || ||||||||||| || || || | | || | || | || || ||||| Sbjct 108417 TATTATACGGTAACAACATCATCTCTGGTGCTATTATCCCTA-CATCTAACGCAATCGGT 108475 Query 28855 CTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGA 28914 || |||||||||||||||||||||||| ||| | || || ||| | |||||||| || Sbjct 108476 CTTCACTTCTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGT 108535 Query 28915 CCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAG 28974 || | |||| | | || | ||||||| | | || || |||||||||| || ||| Sbjct 108536 CCTTACCAATTAATCGTTTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAG 108595 Query 28975 TGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCC 29034 ||||||||| || || |||| ||| | || ||||| ||||| || ||||||||||| Sbjct 108596 TGGGAACTTTCTTACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCA 108655 Query 29035 GTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGAC 29094 || || || ||| |||| || ||| | |||||||| |||| ||||||||||| || Sbjct 108656 GTAGCTGCTGCAACTGCAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGAT 108715 Query 29095 GCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACAT 29154 | |||||||| ||||| || || || ||||||| |||| | || |||||||| || || Sbjct 108716 GGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCAC 108775 Query 29155 AACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTA 29214 |||||| | |||||||| ||||||||| | || |||||||| || || ||||| || || Sbjct 108776 AACATTTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTA 108835 Query 29215 TTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTGCGTGAGACGACTGAAGAC 29274 || || ||||||||||| | || || || || | | ||||| || |||||| || Sbjct 108836 TTCTCAGCTATGCACGGTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAAC 108895 Query 29275 ATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCC 29334 ||| ||| | |||||||| ||||| ||||||||||||||||| ||||||||||| Sbjct 108896 GAATCTGCTAACGAAGGTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCT 108955 Query 29335 GCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCT 29394 || |||||||||||||| ||||| ||||||||||| || || ||||| || ||||| Sbjct 108956 GCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCA 109015 Query 29395 CTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTT 29454 ||||||||||| | ||||| |||||||| | | ||||||||| |||| || || | Sbjct 109016 TTACACTTCTTCTTAGCTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTA 109075 Query 29455 TCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGA-CAACAA 29513 || || ||||| || || | ||||| || ||||| ||||| || || | || |||| Sbjct 109076 TCAACTATGGCATTCAACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAA 109135 Query 29514 TGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGT 29573 |||||||| | || ||||||||||| | |||| || |||||| | || | ||||| Sbjct 109136 -GGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGT 109194 Query 29574 AATGCATGAGCGTAATGCTCATAACTTCCCA 29604 |||||| || ||||| ||||| ||||||||| Sbjct 109195 AATGCACGAACGTAACGCTCACAACTTCCCA 109225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146653896085120