Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq6720 623 3e-174 >seq6720 Length=135362 Score = 623 bits (690), Expect = 3e-174 Identities = 746/1002 (74%), Gaps = 11/1002 (1%) Strand=Plus/Minus Query 18712 CCTTGGGACTC-TTTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTG 18770 |||| || ||| ||||||||| ||| | || || || |||||| | || ||||| || Sbjct 37407 CCTTTGGGCTCGTTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTG 37348 Query 18771 GTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCT 18829 ||| || | ||||| || || | | ||||||| || ||| |||||||| | || Sbjct 37347 GTTCGGTGTGTTAATGATCCCTTGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCT 37289 Query 18830 TCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTC 18889 |||| || || ||||| ||||| || ||||| ||||| ||||| ||| | || |||| Sbjct 37288 TCATCGCAGCTCCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGT--TCTTT 37231 Query 18890 TTTAT--GGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGC-AATGCCATCGGAC 18946 |||| || ||||||||||| || || || | | || | || | || || ||||| | Sbjct 37230 ATTATACGGTAACAACATCATCTCTGGTGCTATTATCCCTA-CATCTAACGCAATCGGTC 37172 Query 18947 TACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGAC 19006 | |||||||||||||||||||||||| ||| | || || ||| | |||||||| || | Sbjct 37171 TTCACTTCTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTC 37112 Query 19007 CGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGT 19066 | | |||| | | || | ||||||| | | || || |||||||||| || |||| Sbjct 37111 CTTACCAATTAATCGTTTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGT 37052 Query 19067 GGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTG 19126 |||||||| || || |||| ||||| |||||||| |||||||| ||||||||||| | Sbjct 37051 GGGAACTTTCTTACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAG 36992 Query 19127 TTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACG 19186 | || || || |||| || ||| | |||| ||| | || |||||||| || || | Sbjct 36991 TAGCTGCTGCAACTGCAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATG 36932 Query 19187 CTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATA 19246 ||||||||| ||||| |||||| ||||||| |||| | |||||||| ||||| || | Sbjct 36931 GTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACA 36872 Query 19247 ACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTAT 19306 |||| | |||||||| ||||||||| | ||||| |||||||| || || || ||| ||| Sbjct 36871 ACATTTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTAT 36812 Query 19307 TTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGCGTGAAACTACTGAAGAGG 19366 | || ||||||||||| | || || || || | | ||||||||||||||| | | Sbjct 36811 TCTCAGCTATGCACGGTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACG 36752 Query 19367 TATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTG 19426 |||| ||| | || ||||| ||||| ||||||||||||||||| ||||| || |||| Sbjct 36751 AATCTGCTAACGAAGGTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTG 36692 Query 19427 CTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTC 19486 | || || || |||||||| | || ||||| |||||||| |||||||| ||||| Sbjct 36691 CACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCAT 36632 Query 19487 TACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAA 19546 |||| ||||| || ||||||||||| || | |||||||||| | || | || || Sbjct 36631 TACACTTCTTCTTAGCTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTAT 36572 Query 19547 GCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACA-ACAAT 19605 || |||||||||||||| || || || ||||| ||||| || || |||| |||| Sbjct 36571 CAACTATGGCATTCAACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAA- 36513 Query 19606 GGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTA 19665 |||||||| | | |||||||||||||| |||| ||||||||| | || | || ||| Sbjct 36512 GGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTA 36453 Query 19666 ATGCACGAACGTAATGCTCATAACTTCCCACTTGATTTGGCT 19707 |||||||||||||| ||||| ||||||||| | || || ||| Sbjct 36452 ATGCACGAACGTAACGCTCACAACTTCCCATTAGACTTAGCT 36411 Score = 623 bits (690), Expect = 3e-174 Identities = 746/1002 (74%), Gaps = 11/1002 (1%) Strand=Plus/Plus Query 18712 CCTTGGGACTC-TTTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTG 18770 |||| || ||| ||||||||| ||| | || || || |||||| | || ||||| || Sbjct 108241 CCTTTGGGCTCGTTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTG 108300 Query 18771 GTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCT 18829 ||| || | ||||| || || | | ||||||| || ||| |||||||| | || Sbjct 108301 GTTCGGTGTGTTAATGATCCCTTGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCT 108359 Query 18830 TCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTC 18889 |||| || || ||||| ||||| || ||||| ||||| ||||| ||| | || |||| Sbjct 108360 TCATCGCAGCTCCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGT--TCTTT 108417 Query 18890 TTTAT--GGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGC-AATGCCATCGGAC 18946 |||| || ||||||||||| || || || | | || | || | || || ||||| | Sbjct 108418 ATTATACGGTAACAACATCATCTCTGGTGCTATTATCCCTA-CATCTAACGCAATCGGTC 108476 Query 18947 TACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGAC 19006 | |||||||||||||||||||||||| ||| | || || ||| | |||||||| || | Sbjct 108477 TTCACTTCTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTC 108536 Query 19007 CGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGT 19066 | | |||| | | || | ||||||| | | || || |||||||||| || |||| Sbjct 108537 CTTACCAATTAATCGTTTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGT 108596 Query 19067 GGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTG 19126 |||||||| || || |||| ||||| |||||||| |||||||| ||||||||||| | Sbjct 108597 GGGAACTTTCTTACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAG 108656 Query 19127 TTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACG 19186 | || || || |||| || ||| | |||| ||| | || |||||||| || || | Sbjct 108657 TAGCTGCTGCAACTGCAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATG 108716 Query 19187 CTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATA 19246 ||||||||| ||||| |||||| ||||||| |||| | |||||||| ||||| || | Sbjct 108717 GTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACA 108776 Query 19247 ACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTAT 19306 |||| | |||||||| ||||||||| | ||||| |||||||| || || || ||| ||| Sbjct 108777 ACATTTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTAT 108836 Query 19307 TTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGCGTGAAACTACTGAAGAGG 19366 | || ||||||||||| | || || || || | | ||||||||||||||| | | Sbjct 108837 TCTCAGCTATGCACGGTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACG 108896 Query 19367 TATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTG 19426 |||| ||| | || ||||| ||||| ||||||||||||||||| ||||| || |||| Sbjct 108897 AATCTGCTAACGAAGGTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTG 108956 Query 19427 CTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTC 19486 | || || || |||||||| | || ||||| |||||||| |||||||| ||||| Sbjct 108957 CACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCAT 109016 Query 19487 TACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAA 19546 |||| ||||| || ||||||||||| || | |||||||||| | || | || || Sbjct 109017 TACACTTCTTCTTAGCTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTAT 109076 Query 19547 GCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGA-CAACAAT 19605 || |||||||||||||| || || || ||||| ||||| || || |||| |||| Sbjct 109077 CAACTATGGCATTCAACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAA- 109135 Query 19606 GGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTA 19665 |||||||| | | |||||||||||||| |||| ||||||||| | || | || ||| Sbjct 109136 GGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTA 109195 Query 19666 ATGCACGAACGTAATGCTCATAACTTCCCACTTGATTTGGCT 19707 |||||||||||||| ||||| ||||||||| | || || ||| Sbjct 109196 ATGCACGAACGTAACGCTCACAACTTCCCATTAGACTTAGCT 109237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141137536325760