Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq16 150 3e-30 seq3912 140 5e-27 seq6716 136 6e-26 seq2517 122 1e-21 seq1025 104 3e-16 seq5134 93.3 6e-13 seq2272 87.8 3e-11 >seq16 Length=68677 Score = 150 bits (166), Expect = 3e-30 Identities = 306/445 (69%), Gaps = 26/445 (6%) Strand=Plus/Plus Query 2129520 GACGGCCGTGCGGATCACCACCGACAGCGAGCAGGCGCCGTCGGCCGAAAAGAATCCCAA 2129579 |||||| ||||||||||| | ||| | | ||||| | |||| ||||| || | Sbjct 33256 GACGGCGGTGCGGATCACGATGTTCAGGTCAAACGTGCCGTTGACCGAGAAGAAGCCGAG 33315 Query 2129580 CGCGCCCGAGTAGATCCCGCGTGGGCGATGCTCTTCAAGACGGTCCAAAATGTCCATGCT 2129639 | ||||||||| | ||||| || || || || || || ||||| ||| ||||||| Sbjct 33316 GGAGCCCGAGTACACGCCGCGCGG-CGC-GCCCTCCA-GATCGTCCAGGATGGCCATGCT 33372 Query 2129640 GCGCGCTTTGGGCGCGCCCGTCATCGAGCCTGGGGGAAAAGCCGCGCGCACGAGGTCCA- 2129698 |||| | |||||||| || ||||| ||| || || || |||||| || | | | Sbjct 33373 GCGCACCTTGGGCGCCCCAGTCATGCTGCCGCCCGGGAATGCGGCGCGCGCGGCGGCGAC 33432 Query 2129699 -GCGCCGTCTGTTGTCGGTCCAAC--AGGCCGTCGACGGTGGTCACCATCTGGTGCACGG 2129755 |||||| | | ||| | | |||||| ||| |||| || | |||||| || | Sbjct 33433 GGCGCCGAC----GCCGGCACGGCGGAGGCCGCGGACCGTGGAGACGAGCTGGTGGACTG 33488 Query 2129756 CGGCATAGGTCTCGATCGCCATCAGCCGGCCGCGCGGCACGACGACGCTGCCGGGCGCGC 2129815 ||| |||| ||||| | | ||||| || ||| ||| |||||||||||| ||| Sbjct 33489 TGGCGTAGGACTCGAGCTCGATCAG------GCCCGGGACGTGCACGCTGCCGGGCTCGC 33542 Query 2129816 AGCACAC-GCTCAGGTCGTTGCGCACCAGATCGACGATCATGAGGTTCTCGGAAAAGGTC 2129874 | ||| | || ||||||||||||| || |||||||||||||||||||| | | Sbjct 33543 A-CACGCGGCCGAGGTCGTTGCGCAAGAGGTCGACGATCATGAGGTTCTCCGCCCGCTCC 33601 Query 2129875 TTGGGGCACGCGGCCAACTCGGCGGCCAAGGCCTCGTCCTCGGTGGG-----CGTGGTGC 2129929 || |||| | |||| | | || || | || |||| ||| ||| || || || Sbjct 33602 TTCTCGCACCCCGCCAGCGCCGCCGCGAGCGCGGCGTCGGCGGCGGGGTCGTCGGGGCGC 33661 Query 2129930 CGCGGCGCGCCGTGCCCTTGATGGG 2129954 ||||| ||| |||||||||||||| Sbjct 33662 CGCGGGGCG--GTGCCCTTGATGGG 33684 >seq3912 Length=5383 Score = 140 bits (154), Expect = 5e-27 Identities = 133/170 (78%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 260000 ATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGC 260059 |||||||||||||| ||||| || ||| ||||||| ||||||||||| ||||||||| Sbjct 1516 ATCGAGGGCATCTACGACACCCTGAAGGAGTGCGCCGTCATCTCCAAGAGCGCCGGCGGC 1457 Query 260060 ATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGC 260119 ||||| | | ||||| | |||||| ||||| ||||| | ||||||||||| Sbjct 1456 ATCGGCGTGTCGATCCACAACATCCGCGCCACGGGCTCCTACATCCGCGGCACCAACGGA 1397 Query 260120 CAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCG 260169 ||||||||| | ||||||||||| ||||| || |||||||| ||||| Sbjct 1396 ACCTCCAACGGCATCGTGCCCATGCTGCGCGTGTTCAACGACACCGCGCG 1347 Score = 98.7 bits (108), Expect = 1e-14 Identities = 118/159 (74%), Gaps = 6/159 (4%) Strand=Plus/Minus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 ||||||||||||||||||||||| ||||| ||||||||| || |||||||| ||| | Sbjct 1096 GGCGGCGGCAAGCGCAAGGGCGCGTTTGCGATCTACCTGGAGCCCTGGCACGCGGACGTG 1037 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 | ||| | || || ||||||||||| || ||||| || || ||||||| Sbjct 1036 TTTGACTTCATCGAGCTGCGCAAGAACCACGGGAA-GGAGGAGG-----CGCGCGCGCGT 983 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATG 261946 || || ||||||| ||| |||| |||||| || ||| Sbjct 982 GACCTGTTTTACGCCCTCTGGATCAACGACCTCTTCATG 944 >seq6716 Length=19574 Score = 136 bits (150), Expect = 6e-26 Identities = 115/139 (83%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 1456172 CTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230 ||| ||||||||||| || | || ||||| |||||||||||||| ||| ||||| || Sbjct 10693 CTTCGCCGAGCGGCTGGTGGCCTACGCCGCAGTCGAGGGCATCTTCTTCAGCGGCAGCTT 10634 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACG 1456290 ||||||||||||||||||||||||||||||||||||| |||| | || |||| ||||| Sbjct 10633 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATG-CCGGGCCTCACCTTTTCCAACG 10575 Query 1456291 AATTTATCAGTCGCGACGA 1456309 | | ||||| || ||||| Sbjct 10574 AGCTCATCAGCCGTGACGA 10556 Score = 111 bits (122), Expect = 2e-18 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 1456046 TGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACA 1456105 || ||||| ||||| |||||||||| || ||||| |||| ||| || | ||||||| || Sbjct 11212 TGCTCGACGCCTACATCAAGGACCCCGTGGAGAAAGACCGCCTATTCCACGCCATCAGCA 11153 Query 1456106 CGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAA 1456154 | |||||| ||| | ||| ||||||||||||||||| ||||||||||| Sbjct 11152 CCGTGCCGGTGGTTAAGAAGAAGGCCGACTGGGCGATCAAGTGGATCAA 11104 Score = 109 bits (120), Expect = 8e-18 Identities = 83/98 (85%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 1456057 TACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCG 1456116 ||| ||||||||||||| |||||||||| ||| |||||||||||| ||| ||||| || Sbjct 6008 TACATCAAGGACCCGGTAGAGAAGGACCGCCTGTTTCGCGCCATCAGCACTGTGCCATCC 5949 Query 1456117 GTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAA 1456154 || | || ||||| ||||||||||| ||||||||||| Sbjct 5948 GTCACCAAGAAGGCAGACTGGGCGATCAAGTGGATCAA 5911 Score = 104 bits (114), Expect = 3e-16 Identities = 108/139 (78%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 1456172 CTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230 ||| ||||||||||| || | || | || || ||||||||| | || ||||| || Sbjct 5515 CTTCGCCGAGCGGCTTGTGGCCTACACGGCTGTGGAGGGCATCCTCTTTAGCGGCAGCTT 5456 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACG 1456290 |||||||||||| |||||||||||||||||||||||| |||| | || ||| ||||| Sbjct 5455 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATG-CCGGGCCTCACCTTCTCCAACG 5397 Query 1456291 AATTTATCAGTCGCGACGA 1456309 | | ||||| || ||||| Sbjct 5396 AGCTCATCAGCCGTGACGA 5378 Score = 98.7 bits (108), Expect = 1e-14 Identities = 121/164 (74%), Gaps = 1/164 (1%) Strand=Plus/Minus Query 1455819 GCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAG 1455878 |||||||| ||||||||||| | ||||| | ||||||| | || | ||||| |||| Sbjct 12179 GCCGAGGAAGTCGACCTCGGGGACGACATGCGCCACTGGACGAGCCTCAACGACGGCGAG 12120 Query 1455879 CGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGA 1455938 ||||| |||||| ||| || || | | || ||||||||| ||| |||||||| || Sbjct 12119 CGCCACTTCATCCTGCATGTGCT-GGCGTTCTTCGCCGCCTCCGACGGCATCGTCTTGGA 12061 Query 1455939 GAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGG 1455982 ||||||| | || ||| |||| ||||| || ||||||| Sbjct 12060 AAACCTGGGGGCGCGGTTTCTGAAGGAGGTGCAGGCCCCAGAGG 12017 Score = 95.1 bits (104), Expect = 2e-13 Identities = 129/176 (73%), Gaps = 3/176 (2%) Strand=Plus/Minus Query 1456566 AGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAA 1456625 |||| |||||||| | ||| || ||||||||| || ||||||| |||||||| || Sbjct 4769 AGTCCCTGCCGGTTGAGCTGATTGGCATGAACAGCAA-GCTCATGACTCAGTACATCGAG 4711 Query 1456626 TTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCA 1456685 | ||||||||||||||||| | || || || |||| ||||||||||| | || Sbjct 4710 TAC-GTCGCCGACCGCCTGCTGGTGGAACTGGGGTGCG-AGAAGCACTACAAAGTGCACA 4653 Query 1456686 ACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 |||| || ||||||||| | ||| || || ||||||||||| |||||| Sbjct 4652 ACCCCTTTGACTGGATGGAGCTCATCAGCCTGCCTGGGAAGACCAACTTCTTCGAG 4597 Score = 95.1 bits (104), Expect = 2e-13 Identities = 124/168 (74%), Gaps = 3/168 (2%) Strand=Plus/Minus Query 1456574 CCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCG 1456633 ||||||| || || |||||||| | ||||||||| ||||||||||| | || | Sbjct 9926 CCGGTGGACCTGATTGGCATGAATGGG-CCGCTCATGGCGCAGTACATTGAGTAC-GTGG 9869 Query 1456634 CCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTC 1456693 ||||||||||||| | |||||| || ||| |||||||||||| | |||||| || Sbjct 9868 CCGACCGCCTGCTTGTGGCGCTGGGGTGC-GAGAAGCACTACAAAGTGCACAACCCCTTT 9810 Query 1456694 CCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 ||||||||| ||||| || || ||||||||||| || ||| Sbjct 9809 GACTGGATGGAGCTGATCAGCCTGCCCGGGAAGACCAACTTCTTTGAG 9762 Score = 86.0 bits (94), Expect = 9e-11 Identities = 118/164 (72%), Gaps = 1/164 (1%) Strand=Plus/Minus Query 1455819 GCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAG 1455878 ||||||||||| ||||| | | |||| | ||||||||| || | ||| | |||| Sbjct 7028 GCCGAGGAGGTGGACCTGGCGGATGACATGCGCCACTGGGTCGGCCTCAACGATGGCGAG 6969 Query 1455879 CGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGA 1455938 ||||| |||||| || ||||| |||| ||| |||||| || ||||| ||| || Sbjct 6968 CGCCACTTCATCCTGCGGGTCCTGGCCTACTTT-GCCGCCTCTGACGGCATTGTGCTGGA 6910 Query 1455939 GAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGG 1455982 |||| ||| | ||||| |||| || ||||| | ||||||| Sbjct 6909 GAACGTGGGGGCGCGCTTCTTGAACGACGTCCAGATCCCAGAGG 6866 >seq2517 Length=9782 Score = 122 bits (134), Expect = 1e-21 Identities = 126/164 (77%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 1455819 GCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAG 1455878 ||||||||||||||||| |||| ||||| | ||||||| | |||| | ||||||| Sbjct 2675 GCCGAGGAGGTCGACCTGGGCGACGACATGCGGCACTGGGAGAAGCTGTCGGGCGACGAG 2734 Query 1455879 CGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGA 1455938 ||||| |||||| |||||| |||| | || |||||||| ||| |||||||| || Sbjct 2735 CGCCACTTCATCCTGCACGTGCTCG-CGTTCTTCGCCGCTTCCGACGGCATCGTCCTGGA 2793 Query 1455939 GAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGG 1455982 |||||||| | |||||| | || |||||||| | ||||||| Sbjct 2794 GAACCTGGGGGCGCGCTTTCTCAAGGAGGTCCAGGTCCCAGAGG 2837 Score = 120 bits (132), Expect = 4e-21 Identities = 112/140 (80%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 1456171 ACTTTGCCGAGCGGCTCGTCGGCTTTGCCGCG-TCGAGGGCATCTTTTTCTCGGGCAGTT 1456229 |||| | ||||| || || | || |||||| ||||||||||||| ||| ||||| | Sbjct 4473 ACTTCTCGGAGCGCCTTGTGGCCTACGCCGCGGTCGAGGGCATCTTCTTCAGCGGCAGCT 4532 Query 1456230 TCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAAC 1456289 ||||||||||||| |||||||||||||||||||||||| |||| | || ||| |||| Sbjct 4533 TCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATG-CCGGGCCTCACCTTCTCCAAC 4591 Query 1456290 GAATTTATCAGTCGCGACGA 1456309 || | ||||| |||||||| Sbjct 4592 GAGCTCATCAGCCGCGACGA 4611 Score = 118 bits (130), Expect = 2e-20 Identities = 131/171 (77%), Gaps = 3/171 (2%) Strand=Plus/Plus Query 1456571 CTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTG 1456630 ||||| || | || ||||||||||||| || ||| ||| |||||||| || ||| | Sbjct 5404 CTGCCCGTCGACCTGATCGGCATGAACGGCAA-GCTGATGGCGCAGTACATCGAGTTT-G 5461 Query 1456631 TCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCG 1456690 | |||||||||||||| | ||| || ||||||| ||||||| |||| | |||||||| Sbjct 5462 TGGCCGACCGCCTGCTGGTGGCCCTGGGCTGCG-AGAAGCAGTACCACAGCGCCAACCCC 5520 Query 1456691 TTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 || ||||||||| | ||| ||| | |||||||||||||| || ||| Sbjct 5521 TTTGACTGGATGGAGCTCATCAGCCTCAACGGCAAGACCAACTTCTTTGAG 5571 >seq1025 Length=17526 Score = 104 bits (114), Expect = 3e-16 Identities = 108/139 (78%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 1456172 CTTTGCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230 |||||| ||||||| | | ||||| |||||||||||||| ||| ||||| || Sbjct 16577 CTTTGCGCAGCGGCTGCTGGCGTTTGCGTGCGTCGAGGGCATCCACTTCAGCGGCAGCTT 16518 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACG 1456290 ||||||||| |||||| |||||||||| ||||||||||| || | || || ||||||| Sbjct 16517 CTGCGCCATATTTTGGATCAAGAAGCGTGGCCTCATGCCAGGGC-TCACGTTCAGCAACG 16459 Query 1456291 AATTTATCAGTCGCGACGA 1456309 | | ||||| || ||||| Sbjct 16458 AGCTCATCAGCCGGGACGA 16440 >seq5134 Length=3537 Score = 93.3 bits (102), Expect = 6e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 1818153 GGGTCGGGGCTGATGACGGCGCGCGCGGTAAAGTTGACGCGCTTGCCCATGCAATTGCCG 1818212 ||||| ||||||||||| | ||||||| | |||| ||||||||||| || |||||| Sbjct 583 GGGTCTGGGCTGATGACCGTGCGCGCGCTGAAGTCCACGCGCTTGCCGCTGAGGTTGCCG 524 Query 1818213 CGGATCCTGCCCTCCTTGCCCTTGAACCGCTCCACGAGGCC 1818253 |||| || |||| ||||||||||| |||| ||||| ||| Sbjct 523 CGGAACCGCCCCTGCTTGCCCTTGAGGCGCTGCACGAAGCC 483 >seq2272 Length=9786 Score = 87.8 bits (96), Expect = 3e-11 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 799188 GCCGCCGCGCAGCCTGAGCACCAGGTGCATCGTCGCATCGGCGCGGATGGCATAGTCGAC 799247 ||| |||||||| | ||||||||||| | ||| | || ||||| |||||| | Sbjct 4743 GCCACCGCGCAGGCGCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 4802 Query 799248 CAGGCGGCGACTGTCTTCCAACTGTTGGCCCGCATAAATGAGGCGCTGCTGGTCGGGTGG 799307 |||| ||||| ||| |||| ||| | ||||||| | || |||||||||||||| || || Sbjct 4803 CAGGGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGG 4862 Query 799308 TATTCCTG 799315 || |||| Sbjct 4863 GATGCCTG 4870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177163043648640