Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq2272 102 7e-17 seq1067 93.3 4e-14 seq2396 86.0 6e-12 seq1439 86.0 6e-12 >seq2272 Length=9786 Score = 102 bits (112), Expect = 7e-17 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | || ||||| || | ||| |||||| || ||||||||||||||| Sbjct 5753 CCACCGCGCAGGCGCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCC 5812 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| ||||||||||| |||||||| |||| ||||||||||||| ||| Sbjct 5813 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 5872 Query 35630 ACGC 35633 | || Sbjct 5873 ATGC 5876 Score = 98.7 bits (108), Expect = 9e-16 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | || ||||| || | ||| |||||| || |||||||| |||||| Sbjct 4744 CCACCGCGCAGGCGCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 4803 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 | ||| || |||| ||||||||||| |||||||| |||| ||||||||||||| ||| Sbjct 4804 AGGGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGG 4862 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | || |||||| || | ||| |||||| || |||||||| || ||| Sbjct 6252 CCACCGCGCAGGCGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 6311 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 | ||| || |||| ||||||||||| || ||||| |||| ||||||||||||| ||| Sbjct 6312 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGGTCCGGAGG 6370 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | || |||||| || | ||| |||||| ||||||||||| || ||| Sbjct 5243 CCACCGCGCAGGCGCAGCACCAAGTGCAGCGTTGACTCCTTCTGAATGTTGTAGTCAGCC 5302 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCG 35624 | ||| || | || ||||||||||| ||||| || |||| ||||||||||||| Sbjct 5303 AGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCG 5357 >seq1067 Length=17102 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||||| || | || |||||| || ||||||||||||||| Sbjct 10213 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCC 10154 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 | ||| || |||| ||||||||||| || || || |||| ||||||||||||| ||| Sbjct 10153 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGAGG 10095 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| ||||||| ||| || |||| ||||||||||| || || || Sbjct 10707 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAA 10648 Query 35605 TATCAACCGCTGCTGGTCCGAAGG 35628 |||| ||||||||||||| ||| Sbjct 10647 GATCAGGCGCTGCTGGTCCGGAGG 10624 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | || ||||| || | ||| |||||| || |||||||| |||||| Sbjct 11216 CCACCGCGCAGGCGCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 11157 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCG 35624 | ||| || | || ||||||||||| || || || |||| ||||||||||||| Sbjct 11156 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCG 11102 >seq2396 Length=9575 Score = 86.0 bits (94), Expect = 6e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| ||||||| ||| || |||| ||||||||||| || ||||| Sbjct 590 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAA 649 Query 35605 TATCAACCGCTGCTGGTCCG 35624 |||| ||||||||||||| Sbjct 650 GATCAGACGCTGCTGGTCCG 669 Score = 86.0 bits (94), Expect = 6e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| ||||||| ||| || |||| ||||||||||| || ||||| Sbjct 1048 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAA 1107 Query 35605 TATCAACCGCTGCTGGTCCG 35624 |||| ||||||||||||| Sbjct 1108 GATCAGACGCTGCTGGTCCG 1127 >seq1439 Length=14137 Score = 86.0 bits (94), Expect = 6e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| ||||||| ||| || |||| ||||||||||| || ||||| Sbjct 2973 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAA 2914 Query 35605 TATCAACCGCTGCTGGTCCG 35624 |||| ||||||||||||| Sbjct 2913 GATCAGGCGCTGCTGGTCCG 2894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450755733337600