Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq2272 104 2e-17 seq2396 95.1 1e-14 seq1439 89.7 5e-13 seq1067 89.7 5e-13 >seq2272 Length=9786 Score = 104 bits (114), Expect = 2e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| |||||||| ||||| || |||||||||||| | | |||| || Sbjct 4753 AGGCGCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGA 4812 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 ||| || ||||| ||||| ||||| |||| |||||||| || || || |||||| Sbjct 4813 CCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCT 4869 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| | ||| |||||||| ||||| || ||||||||||| | | |||| | Sbjct 6261 AGGCGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGG 6320 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 ||| || ||||| ||||||||||| |||| |||||||| || || || |||||| Sbjct 6321 CCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCT 6377 >seq2396 Length=9575 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| || || || ||||| || |||||||||||| | | |||| | Sbjct 564 AGGCGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 623 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 ||| || ||||| ||||| ||||| |||| ||||||||| || || || |||||| Sbjct 624 CCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCT 680 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| || || || ||||| || |||||||||||| | | |||| | Sbjct 1022 AGGCGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 1081 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 ||| || ||||| ||||| ||||| |||| ||||||||| || || || |||||| Sbjct 1082 CCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCT 1138 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| || || || ||||| || ||||||||||| | | |||| | Sbjct 50 AGGCGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGG 109 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 ||| || ||||| ||||| || || |||| ||||||||| || || || |||||| Sbjct 110 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGGATGCCT 166 >seq1439 Length=14137 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| || || || ||||| || |||||||||||| | | |||| | Sbjct 2999 AGGCGCAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 2940 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 ||| || ||||| ||||| ||||| |||| |||||||| || || || |||||| Sbjct 2939 CCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCT 2883 >seq1067 Length=17102 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| || ||||| ||||| || |||||||||||| | | |||| | Sbjct 10733 AGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 10674 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 ||| || ||||| ||||| || || |||| |||||||| || || || |||||| Sbjct 10673 CCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCT 10617 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| |||||||| ||||| || |||||||||||| | | |||| | Sbjct 11207 AGGCGCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 11148 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 || || ||||| ||||| || || |||| |||||||| || || || |||||| Sbjct 11147 CCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCT 11091 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| || ||||| ||||| ||||||||||||||| | | ||| | Sbjct 11662 AGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCCAGAGTGCGG 11603 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 || || ||||| ||||| || || |||| |||||||| || || || |||||| Sbjct 11602 CCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCT 11546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505355946534400