Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq6720 794 0.0 >seq6720 Length=135362 Score = 794 bits (880), Expect = 0.0 Identities = 771/989 (78%), Gaps = 2/989 (0%) Strand=Plus/Minus Query 157676 TTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACTG 157735 || || |||||| | || ||||| | |||||||| || | |||||||||||||| | Sbjct 37394 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 37335 Query 157736 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 157794 ||||| ||| || | | || || |||||| ||||| ||| |||| |||| ||||| Sbjct 37334 ATGATCCCTTGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAGCTCC 37276 Query 157795 CCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAA 157854 || || || || || || ||||| || |||||| ||||||| | | || |||||||| Sbjct 37275 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAA 37216 Query 157855 CATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCAT 157914 ||||||||||||||| || | |||| || |||||||||||||| ||||||||||| || Sbjct 37215 CATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAAT 37156 Query 157915 CTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAGT 157974 |||||||| || ||| | ||||||||| | || ||||||||||||| |||| | | || Sbjct 37155 TTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 37096 Query 157975 ATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTCTCTTACCG 158034 | ||||||| | | || | | || ||||| |||||||||||||| |||||||| Sbjct 37095 TTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 37036 Query 158035 TTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTGC 158094 |||||||||||| || ||||||||||| || || || |||||||| ||||| || | ||| Sbjct 37035 TTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGC 36976 Query 158095 AGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 158154 ||||||| || |||| || |||| |||||||||||||| |||| ||||||| | ||||| Sbjct 36975 AGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 36916 Query 158155 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 158214 |||||||||||| |||| |||| | ||||||||||| || |||||||| | |||||||| Sbjct 36915 CTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCC 36856 Query 158215 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 158274 ||||| ||| | ||||||||||| ||||| ||||| || | ||||| |||||||| || Sbjct 36855 ATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGG 36796 Query 158275 AAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTACGG 158334 | || ||||| ||| | | |||||||| ||||||| || || ||| | || Sbjct 36795 TTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGG 36736 Query 158335 TTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCATGGCTACTTCGG 158394 ||| || || ||||||||||||||||| ||||||||||| || || || || ||||| || Sbjct 36735 TTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGG 36676 Query 158395 TCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGC 158454 |||||| |||||||||||||| |||||||||||||| ||||| || ||||||||| | || Sbjct 36675 TCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGC 36616 Query 158455 TGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAA 158514 ||| ||||| || || |||| |||||||| || | || | ||||| ||||||||||| Sbjct 36615 TGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCAA 36556 Query 158515 CCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 158574 | | ||||| |||||||||||||| || | ||||| || |||||||| || ||||| Sbjct 36555 CTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACAC 36496 Query 158575 CTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGC 158634 ||||| || | | ||||| ||| | ||||||||||| ||||| || |||||||| Sbjct 36495 TTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGC 36436 Query 158635 ACACAACTTCCCACTGGATCTTGCTGCTG 158663 |||||||||||| | || | ||| ||| Sbjct 36435 TCACAACTTCCCATTAGACTTAGCTTCTG 36407 Score = 794 bits (880), Expect = 0.0 Identities = 771/989 (78%), Gaps = 2/989 (0%) Strand=Plus/Plus Query 157676 TTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACTG 157735 || || |||||| | || ||||| | |||||||| || | |||||||||||||| | Sbjct 108254 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 108313 Query 157736 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 157794 ||||| ||| || | | || || |||||| ||||| ||| |||| |||| ||||| Sbjct 108314 ATGATCCCTTGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAGCTCC 108372 Query 157795 CCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAA 157854 || || || || || || ||||| || |||||| ||||||| | | || |||||||| Sbjct 108373 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAA 108432 Query 157855 CATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCAT 157914 ||||||||||||||| || | |||| || |||||||||||||| ||||||||||| || Sbjct 108433 CATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAAT 108492 Query 157915 CTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAGT 157974 |||||||| || ||| | ||||||||| | || ||||||||||||| |||| | | || Sbjct 108493 TTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 108552 Query 157975 ATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTCTCTTACCG 158034 | ||||||| | | || | | || ||||| |||||||||||||| |||||||| Sbjct 108553 TTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 108612 Query 158035 TTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTGC 158094 |||||||||||| || ||||||||||| || || || |||||||| ||||| || | ||| Sbjct 108613 TTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGC 108672 Query 158095 AGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 158154 ||||||| || |||| || |||| |||||||||||||| |||| ||||||| | ||||| Sbjct 108673 AGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 108732 Query 158155 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 158214 |||||||||||| |||| |||| | ||||||||||| || |||||||| | |||||||| Sbjct 108733 CTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCC 108792 Query 158215 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 158274 ||||| ||| | ||||||||||| ||||| ||||| || | ||||| |||||||| || Sbjct 108793 ATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGG 108852 Query 158275 AAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTACGG 158334 | || ||||| ||| | | |||||||| ||||||| || || ||| | || Sbjct 108853 TTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGG 108912 Query 158335 TTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCATGGCTACTTCGG 158394 ||| || || ||||||||||||||||| ||||||||||| || || || || ||||| || Sbjct 108913 TTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGG 108972 Query 158395 TCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGC 158454 |||||| |||||||||||||| |||||||||||||| ||||| || ||||||||| | || Sbjct 108973 TCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGC 109032 Query 158455 TGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAA 158514 ||| ||||| || || |||| |||||||| || | || | ||||| ||||||||||| Sbjct 109033 TGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCAA 109092 Query 158515 CCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 158574 | | ||||| |||||||||||||| || | ||||| || |||||||| || ||||| Sbjct 109093 CTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACAC 109152 Query 158575 CTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGC 158634 ||||| || | | ||||| ||| | ||||||||||| ||||| || |||||||| Sbjct 109153 TTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGC 109212 Query 158635 ACACAACTTCCCACTGGATCTTGCTGCTG 158663 |||||||||||| | || | ||| ||| Sbjct 109213 TCACAACTTCCCATTAGACTTAGCTTCTG 109241 Score = 565 bits (626), Expect = 3e-156 Identities = 726/1001 (73%), Gaps = 0/1001 (0%) Strand=Plus/Plus Query 159391 GATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTT 159450 ||||||||| | | ||| || ||||| ||||| |||||||| || || || | | Sbjct 121714 GATGACTGGTTACGTCAAGACCGTTTTGTTTTTGTAGGTTGGTCAGGTCTTCTTTTATTA 121773 Query 159451 CCCACTGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGACTTTTATCACGAGTTGG 159510 || ||| ||| | || | || |||||| ||||||| || || ||| | || |||| Sbjct 121774 CCTTGTGCGTATTTTGCATTAGGTGGTTGGTTTACTGGGACAACATTTGTTACTTCTTGG 121833 Query 159511 TACACCCACGGTCTTGCTAGTTCCTACCTTGAAGGTGCTAATTTTCTCACGGCAGCTGTC 159570 ||||| || ||| | || | ||| ||| | |||||| ||| || | || || || || Sbjct 121834 TACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCAGTT 121893 Query 159571 TCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAA 159630 || || || || | ||||| ||||||| | | | ||||||| ||||| ||||| Sbjct 121894 TCGACTCCAGCAAACAGTATGGCTCATTCTTTATTATTTATTTGGGGACCTGAAGCTCAA 121953 Query 159631 GGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGTTGCTCTCCACGGT 159690 || ||||| ||| ||||| ||| | || || | ||| | ||||| || || || ||| Sbjct 121954 GGTGACTTTACACGTTGGTGTCAATTAGGTGGTTTATGGACTTTTGTAGCACTGCATGGT 122013 Query 159691 GCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTCGTCTAGTTGGTATC 159750 || || | | | || ||||||||| |||| |||||||||||||| ||| ||| | Sbjct 122014 GCTTTTGGTTTAATTGGTTTTATGTTACGTCAATTTGAAATTGCACGTTCAGTAAACTTA 122073 Query 159751 CGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTATTCCTT 159810 ||||| || || || ||||| ||||||| || |||||||| ||||| ||||| | Sbjct 122074 CGTCCATATAACGCAATTGCTTTCTCTGCACCAATTGCTGTATTTGTTTCTGTATTTTTA 122133 Query 159811 ATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATC 159870 || || || | ||||| ||| |||||||| || |||||||| || || || || || Sbjct 122134 ATTTACCCTTTAGGTCAATCTGGTTGGTTCTTCGCCCCTAGTTTTGGTGTTGCCGCTATT 122193 Query 159871 TTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATG 159930 || | || | || ||| | || ||||||||||||||||| || ||||| ||||| ||| Sbjct 122194 TTCCGTTTTATCTTATTCTTCCAAGGTTTCCACAACTGGACACTTAACCCATTCCACATG 122253 Query 159931 ATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATCCATGGTGCTACTGTA 159990 ||||||||||||||| | |||||| || || || ||||| || ||||||||||| ||| Sbjct 122254 ATGGGAGTTGCTGGTGTTTTAGGTGCGGCTCTATTATGTGCTATTCATGGTGCTACAGTA 122313 Query 159991 GAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTAAGGCGTTTGAGCCTACT 160050 || || || | || |||||||| || || |||||||| || ||| | ||||| Sbjct 122314 GAAAATACTCTTTTCGAAGATGGTGATGGTGCTAACACATTCCGTGCATTTAACCCTACG 122373 Query 160051 CAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGT 160110 |||| ||||| ||||| |||||||| || || || | |||||||| || || || ||| Sbjct 122374 CAAGCTGAAGAAACTTACTCTATGGTAACAGCTAATAGATTCTGGTCACAAATTTTTGGT 122433 Query 160111 GTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGT 160170 || || ||||| ||||| || ||| | || || || ||||| ||||| ||||| | ||| Sbjct 122434 GTAGCTTTTTCAAACAAACGTTGGTTACACTTCTTTATGTTATTTGTTCCTGTGACAGGT 122493 Query 160171 CTATGGACATCCTCTATTGGCATTATTGGTCTTGCTTTCAACCTTCGTGCTTACGATTTC 160230 || |||| || ||||||| || | ||| | ||| | ||| | ||||||||||| ||| Sbjct 122494 CTTTGGATGTCTGCTATTGGTGTTGTAGGTTTAGCTCTTAACTTACGTGCTTACGACTTC 122553 Query 160231 GTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAGACCTTCTACACCAAGAAC 160290 || || |||||| | || || |||||||| |||||||| || |||||||| || ||| Sbjct 122554 GTTTCACAAGAGATTCGTGCTGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAAAC 122613 Query 160291 ATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCTGATCAACCACATGAAAAC 160350 | || | |||||||| | |||||||||||||| | || || ||||| ||| | Sbjct 122614 CTTCTTCTTAATGAAGGTATCCGTGCTTGGATGGCTGCACAAGACCAGCCACACGAACGC 122673 Query 160351 TTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAACGCACT 160391 || | ||||| || |||||| ||||| | |||||||| || Sbjct 122674 TTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGCTCT 122714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572975865984000