Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq6720 765 0.0 >seq6720 Length=135362 Score = 765 bits (848), Expect = 0.0 Identities = 770/994 (77%), Gaps = 10/994 (1%) Strand=Plus/Minus Query 159959 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 160018 ||| || |||||| | ||||| || | ||||| | || ||||||||||||| || | Sbjct 37395 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTT 37336 Query 160019 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 160077 ||||| || | || |||| || |||||| ||||| ||| |||| |||| |||| Sbjct 37335 AATGATCCCTTGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAGCTC 37277 Query 160078 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 160137 | || || || ||||| || |||||||| || || ||||||| | | || ||||||| Sbjct 37276 CTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACA 37217 Query 160138 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 160197 |||||||||||||||| || | || | || |||||||| |||||||||||||| || | Sbjct 37216 ACATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAA 37157 Query 160198 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 160257 | |||||||| || || | || |||||| | || ||||||||||||| |||| | | | Sbjct 37156 TTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCG 37097 Query 160258 TATTTCACTTCCTTATCGGCATCTATGCATAT---ATGGGACGTGAGTGGGAACTTTCAT 160314 | | |||||| | | || | ||||| | ||||| ||||||||||||||||| | Sbjct 37096 TTTGCCACTTCTTATTAGGTGT---TGCATCTTACATGGGTCGTGAGTGGGAACTTTCTT 37040 Query 160315 ACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCAT 160374 |||||||||||||||| || ||||||||||| || || || |||||||| ||||| ||| Sbjct 37039 ACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAA 36980 Query 160375 CTGCTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTG 160434 |||| |||||| | | || || |||| |||||||||||||| |||| ||||||| | | Sbjct 36979 CTGCAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAG 36920 Query 160435 GTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGC 160494 |||||||||||||||| |||| |||| | ||||||||||| || ||||| || | |||| Sbjct 36919 GTATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGC 36860 Query 160495 ATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGC 160554 | || ||||||||| | || |||||||| ||||| ||||| || || ||||| ||||||| Sbjct 36859 ACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGC 36800 Query 160555 ACGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACT 160614 |||| | || ||||| ||| | | |||||||| ||||||| || || ||| Sbjct 36799 ACGGTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACG 36740 Query 160615 ACGGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACT 160674 | ||||| || || |||||||| |||||||| ||||||||||| || || || ||||||| Sbjct 36739 AAGGTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACT 36680 Query 160675 TCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTCTTCC 160734 | |||||||| ||||||||||| ||||||||||||||||| |||||| | ||||||||| Sbjct 36679 TTGGTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCT 36620 Query 160735 TGGCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACC-ATGGCA 160793 | || || ||||| ||| || | || |||||||||||| | ||| ||| || | |||||| Sbjct 36619 TAGCTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGT-TTATCAACTATGGCA 36561 Query 160794 TTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTG 160853 |||||| | ||||| |||||||||||||| || | | ||| |||||||||||| | Sbjct 36560 TTCAACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTA 36501 Query 160854 AACACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGT 160913 ||||| ||||| ||| | | || |||||| | ||||||||||| ||||| || ||| Sbjct 36500 AACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGT 36441 Query 160914 AACGCACACAACTTCCCACTCGACCTCGCTGCTG 160947 ||||| |||||||||||| | ||| | ||| ||| Sbjct 36440 AACGCTCACAACTTCCCATTAGACTTAGCTTCTG 36407 Score = 765 bits (848), Expect = 0.0 Identities = 770/994 (77%), Gaps = 10/994 (1%) Strand=Plus/Plus Query 159959 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 160018 ||| || |||||| | ||||| || | ||||| | || ||||||||||||| || | Sbjct 108253 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTT 108312 Query 160019 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 160077 ||||| || | || |||| || |||||| ||||| ||| |||| |||| |||| Sbjct 108313 AATGATCCCTTGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAGCTC 108371 Query 160078 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 160137 | || || || ||||| || |||||||| || || ||||||| | | || ||||||| Sbjct 108372 CTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACA 108431 Query 160138 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 160197 |||||||||||||||| || | || | || |||||||| |||||||||||||| || | Sbjct 108432 ACATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAA 108491 Query 160198 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 160257 | |||||||| || || | || |||||| | || ||||||||||||| |||| | | | Sbjct 108492 TTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCG 108551 Query 160258 TATTTCACTTCCTTATCGGCATCTATGCATAT---ATGGGACGTGAGTGGGAACTTTCAT 160314 | | |||||| | | || | ||||| | ||||| ||||||||||||||||| | Sbjct 108552 TTTGCCACTTCTTATTAGGTGT---TGCATCTTACATGGGTCGTGAGTGGGAACTTTCTT 108608 Query 160315 ACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCAT 160374 |||||||||||||||| || ||||||||||| || || || |||||||| ||||| ||| Sbjct 108609 ACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAA 108668 Query 160375 CTGCTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTG 160434 |||| |||||| | | || || |||| |||||||||||||| |||| ||||||| | | Sbjct 108669 CTGCAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAG 108728 Query 160435 GTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGC 160494 |||||||||||||||| |||| |||| | ||||||||||| || ||||| || | |||| Sbjct 108729 GTATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGC 108788 Query 160495 ATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGC 160554 | || ||||||||| | || |||||||| ||||| ||||| || || ||||| ||||||| Sbjct 108789 ACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGC 108848 Query 160555 ACGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACT 160614 |||| | || ||||| ||| | | |||||||| ||||||| || || ||| Sbjct 108849 ACGGTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACG 108908 Query 160615 ACGGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACT 160674 | ||||| || || |||||||| |||||||| ||||||||||| || || || ||||||| Sbjct 108909 AAGGTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACT 108968 Query 160675 TCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTCTTCC 160734 | |||||||| ||||||||||| ||||||||||||||||| |||||| | ||||||||| Sbjct 108969 TTGGTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCT 109028 Query 160735 TGGCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGC-ACCATGGCA 160793 | || || ||||| ||| || | || |||||||||||| | ||| ||| | || |||||| Sbjct 109029 TAGCTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGT-TTATCAACTATGGCA 109087 Query 160794 TTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTG 160853 |||||| | ||||| |||||||||||||| || | | ||| |||||||||||| | Sbjct 109088 TTCAACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTA 109147 Query 160854 AACACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGT 160913 ||||| ||||| ||| | | || |||||| | ||||||||||| ||||| || ||| Sbjct 109148 AACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGT 109207 Query 160914 AACGCACACAACTTCCCACTCGACCTCGCTGCTG 160947 ||||| |||||||||||| | ||| | ||| ||| Sbjct 109208 AACGCTCACAACTTCCCATTAGACTTAGCTTCTG 109241 Score = 497 bits (550), Expect = 1e-135 Identities = 705/991 (71%), Gaps = 8/991 (1%) Strand=Plus/Plus Query 161718 GATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 161777 || ||||| |||||||| || ||||| || |||||| | | || ||| ||| |||| Sbjct 121732 GACCGTTTTGTTTTTGTAGGTTGGTCAGGTCTTCTTTTATTACCTTGTGCGTATTTTGCA 121791 Query 161778 ATTGGCGGTTGGCTTACTGGCACAACTTTCGCAACGAGCTGGTATACCCATGGTCTCGCT 161837 | || |||||| ||||||| ||||| || | || ||||| || |||||| | || Sbjct 121792 TTAGGTGGTTGGTTTACTGGGACAACATTTGTTACTTCTTGGTACACACATGGTTTAGCA 121851 Query 161838 AGTTCCTATCTTGAGGGTGCAAACTTTCTTACAGCGTCAGTTAGCACTCCAGCTGACGCT 161897 | ||| || | || ||| ||||| | || || ||||| |||||||| || | Sbjct 121852 ACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCAGTTTCGACTCCAGCAAACAGT 121911 Query 161898 ATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCCGCTGG 161957 |||| ||||||| | | || | ||||| ||||| |||||||| || || || ||| Sbjct 121912 ATGGCTCATTCTTTATTATTTATTTGGGGACCTGAAGCTCAAGGTGACTTTACACGTTGG 121971 Query 161958 GTCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGA 162017 ||| | || || | |||| |||||| ||||| |||||||| || | ||||||| Sbjct 121972 TGTCAATTAGGTGGTTTATGGACTTTTGTAGCACTGCATGGTGCTTTTGGTTTAATTGGT 122031 Query 162018 TTCATGCTCCGTCAGTTTGAACTGGCACGTCTTATTGGTA----TCCGTCCCTACAATGC 162073 || ||| | ||||| |||||| | |||||| | ||| | ||||| || || || Sbjct 122032 TTTATGTTACGTCAATTTGAAATTGCACGT----TCAGTAAACTTACGTCCATATAACGC 122087 Query 162074 TATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCATTGGG 162133 ||||| ||||||| || |||||||| ||||| || || | || ||||| || || Sbjct 122088 AATTGCTTTCTCTGCACCAATTGCTGTATTTGTTTCTGTATTTTTAATTTACCCTTTAGG 122147 Query 162134 TCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTT 162193 ||| || ||||||| ||||| || ||||| || || || || || | || | || Sbjct 122148 TCAATCTGGTTGGTTCTTCGCCCCTAGTTTTGGTGTTGCCGCTATTTTCCGTTTTATCTT 122207 Query 162194 GTTTCTTCAAGGATTCCATAACTGGACCCTGAACCCCTTCCATATGATGGGAGTTGCTGG 162253 || | ||||| ||||| |||||||| || ||||| ||||| ||||||||||||||||| Sbjct 122208 ATTCTTCCAAGGTTTCCACAACTGGACACTTAACCCATTCCACATGATGGGAGTTGCTGG 122267 Query 162254 TATACTAGGTGGAGCACTTCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTATA 162313 | | |||||| || || ||| ||||||||| || | ||||| |||||||| | | Sbjct 122268 TGTTTTAGGTGCGGCTCTATTATGTGCTATTCATGGTGCTACAGTAGAAAATACTCTTTT 122327 Query 162314 CGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAGGAAGAGAC 162373 ||| ||||| || || ||||| || || ||| | | || || | ||||| || Sbjct 122328 CGAAGATGGTGATGGTGCTAACACATTCCGTGCATTTAACCCTACGCAAGCTGAAGAAAC 122387 Query 162374 TTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAA 162433 ||| |||||||| || || || | |||||||| || || || ||| | || ||||| || Sbjct 122388 TTACTCTATGGTAACAGCTAATAGATTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAA 122447 Query 162434 CAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTC 162493 ||| || ||| | || || || ||||| ||||| ||||| | ||||| |||| || | Sbjct 122448 CAAACGTTGGTTACACTTCTTTATGTTATTTGTTCCTGTGACAGGTCTTTGGATGTCTGC 122507 Query 162494 TATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGAT 162553 |||||| || | ||| | ||||| ||| | ||||||||||| ||||| || ||||| Sbjct 122508 TATTGGTGTTGTAGGTTTAGCTCTTAACTTACGTGCTTACGACTTCGTTTCACAAGAGAT 122567 Query 162554 CAGAGCAGCAGAAGATCCTGAGTTTGAAACGTTCTACACTAAGAACATTCTGCTCAATGA 162613 | || || |||||||| || |||||||| ||||||||||| ||| |||| || ||||| Sbjct 122568 TCGTGCTGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAAACCTTCTTCTTAATGA 122627 Query 162614 AGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGA 162673 ||| | ||||| ||| | || | ||||| || || || ||| | |||||||| Sbjct 122628 AGGTATCCGTGCTTGGATGGCTGCACAAGACCAGCCACACGAACGCTTAGTATTCCCAGA 122687 Query 162674 AGAAGTTCTTCCTAGAGGCAACGCCCTTTAA 162704 |||||| | ||| | || ||||| || ||| Sbjct 122688 AGAAGTATTACCTCGTGGTAACGCTCTATAA 122718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559457001664000