Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq6720 747 0.0 >seq6720 Length=135362 Score = 747 bits (828), Expect = 0.0 Identities = 751/973 (77%), Gaps = 2/973 (0%) Strand=Plus/Minus Query 180980 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 181039 ||| || |||||| | ||||| || | ||||| | || ||||||||||||| || | Sbjct 37395 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTT 37336 Query 181040 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 181098 ||||| || | || |||| || |||||| ||||| ||| |||| |||| |||| Sbjct 37335 AATGATCCCTTGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAGCTC 37277 Query 181099 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 181158 | || || || ||||| || |||||||| || || ||||||| | | || ||||||| Sbjct 37276 CTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACA 37217 Query 181159 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 181218 |||||||||||||||| || | || | || |||||||| |||||||||||||| || | Sbjct 37216 ACATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAA 37157 Query 181219 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 181278 | |||||||| || || | || |||||| | || ||||||||||||| |||| | | | Sbjct 37156 TTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCG 37097 Query 181279 TCTTTCACTTCCTTATCGGCATTTATGCATACATGGGACGTGAATGGGAACTCTCTTACC 181338 | | |||||| | | || || | |||||||| ||||| |||||||| ||||||| Sbjct 37096 TTTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACC 37037 Query 181339 GCTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCTG 181398 | ||||||||||| || |||||||||||||| ||||| |||||||| || || ||| ||| Sbjct 37036 GTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTG 36977 Query 181399 CTGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCA 181458 | |||||| || |||| || |||| ||||||||||||||||| | ||||| | || | Sbjct 36976 CAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTA 36917 Query 181459 TCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATC 181518 |||||||||| ||||||| |||| | || |||||||| |||||||||||| | ||||| | Sbjct 36916 TCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACC 36857 Query 181519 CCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGTGCAATGCACG 181578 | ||||||||||| ||||| || |||||||||||||||||| | ||| || ||||||| Sbjct 36856 CATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACG 36797 Query 181579 GTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATG 181638 |||| || || || || ||| | ||||||| || ||||||| || || ||| | | Sbjct 36796 GTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAG 36737 Query 181639 GTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTTTG 181698 ||||||| || || |||||||||||||| ||||||||||| || || ||||||||||||| Sbjct 36736 GTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTG 36677 Query 181699 GTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCG 181758 |||| || ||||||||||| || |||||||||||||| |||||| | ||||||||| | | Sbjct 36676 GTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAG 36617 Query 181759 CAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTA 181818 | || ||||| ||| | | || |||||||| || | || || || |||||||| | Sbjct 36616 CTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCA 36557 Query 181819 ACCTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGACAAGGACGTGTCCTCAACA 181878 || | || || |||||||||||||| || | | || |||||| ||||| | |||| Sbjct 36556 ACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACA 36497 Query 181879 CCTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACG 181938 | ||||| ||| | |||||||||| | || |||||||| |||||||| || |||| Sbjct 36496 CTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACG 36437 Query 181939 CGCACAACTTCCC 181951 | ||||||||||| Sbjct 36436 CTCACAACTTCCC 36424 Score = 747 bits (828), Expect = 0.0 Identities = 751/973 (77%), Gaps = 2/973 (0%) Strand=Plus/Plus Query 180980 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 181039 ||| || |||||| | ||||| || | ||||| | || ||||||||||||| || | Sbjct 108253 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTT 108312 Query 181040 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 181098 ||||| || | || |||| || |||||| ||||| ||| |||| |||| |||| Sbjct 108313 AATGATCCCTTGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAGCTC 108371 Query 181099 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 181158 | || || || ||||| || |||||||| || || ||||||| | | || ||||||| Sbjct 108372 CTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACA 108431 Query 181159 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 181218 |||||||||||||||| || | || | || |||||||| |||||||||||||| || | Sbjct 108432 ACATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAA 108491 Query 181219 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 181278 | |||||||| || || | || |||||| | || ||||||||||||| |||| | | | Sbjct 108492 TTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCG 108551 Query 181279 TCTTTCACTTCCTTATCGGCATTTATGCATACATGGGACGTGAATGGGAACTCTCTTACC 181338 | | |||||| | | || || | |||||||| ||||| |||||||| ||||||| Sbjct 108552 TTTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACC 108611 Query 181339 GCTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCTG 181398 | ||||||||||| || |||||||||||||| ||||| |||||||| || || ||| ||| Sbjct 108612 GTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTG 108671 Query 181399 CTGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCA 181458 | |||||| || |||| || |||| ||||||||||||||||| | ||||| | || | Sbjct 108672 CAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTA 108731 Query 181459 TCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATC 181518 |||||||||| ||||||| |||| | || |||||||| |||||||||||| | ||||| | Sbjct 108732 TCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACC 108791 Query 181519 CCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGTGCAATGCACG 181578 | ||||||||||| ||||| || |||||||||||||||||| | ||| || ||||||| Sbjct 108792 CATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACG 108851 Query 181579 GTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATG 181638 |||| || || || || ||| | ||||||| || ||||||| || || ||| | | Sbjct 108852 GTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAG 108911 Query 181639 GTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTTTG 181698 ||||||| || || |||||||||||||| ||||||||||| || || ||||||||||||| Sbjct 108912 GTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTG 108971 Query 181699 GTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCG 181758 |||| || ||||||||||| || |||||||||||||| |||||| | ||||||||| | | Sbjct 108972 GTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAG 109031 Query 181759 CAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTA 181818 | || ||||| ||| | | || |||||||| || | || || || |||||||| | Sbjct 109032 CTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCA 109091 Query 181819 ACCTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGACAAGGACGTGTCCTCAACA 181878 || | || || |||||||||||||| || | | || |||||| ||||| | |||| Sbjct 109092 ACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACA 109151 Query 181879 CCTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACG 181938 | ||||| ||| | |||||||||| | || |||||||| |||||||| || |||| Sbjct 109152 CTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACG 109211 Query 181939 CGCACAACTTCCC 181951 | ||||||||||| Sbjct 109212 CTCACAACTTCCC 109224 Score = 522 bits (578), Expect = 3e-143 Identities = 710/985 (72%), Gaps = 4/985 (0%) Strand=Plus/Plus Query 182391 GATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTTCCCACTGCTTATCTTGCC 182450 || || ||||| ||||| |||||||| || || || | | || ||| ||| |||| Sbjct 121732 GACCGTTTTGTTTTTGTAGGTTGGTCAGGTCTTCTTTTATTACCTTGTGCGTATTTTGCA 121791 Query 182451 ATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGGTACACCCACGGTCTTGCT 182510 | || |||||| ||||||||||| | |||||||| ||||||||| || ||| | || Sbjct 121792 TTAGGTGGTTGGTTTACTGGGACAACATTTGTTACTTCTTGGTACACACATGGTTTAGCA 121851 Query 182511 TCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGATGCT 182570 |||| || | |||||| |||||| | || || || || ||||| || || | | Sbjct 121852 ACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCAGTTTCGACTCCAGCAAACAGT 121911 Query 182571 ATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGG-GAATTTCCAGCGGTG 182629 |||| ||||||| | | | ||||||| ||||| |||| || || ||| || || || Sbjct 121912 ATGGCTCATTCTTTATTATTTATTTGGGGACCTGAAGCTCAAGGTGACTTTACA-CGTTG 121970 Query 182630 GTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGG 182689 ||| ||| | || || | |||| ||| || || || || ||||| || | | | ||||| Sbjct 121971 GTGTCAATTAGGTGGTTTATGGACTTTTGTAGCACTGCATGGTGCTTTTGGTTTAATTGG 122030 Query 182690 TTTCATGCTTAGGCAATTTGAACTTGCTCGCCTGATTGGAATCA-GACCTTACAATGCGA 182748 ||| ||| | | ||||||||| |||| || | | | | | | | || || || || | Sbjct 122031 TTTTATGTTACGTCAATTTGAAATTGCACGT-TCAGTAAACTTACGTCCATATAACGCAA 122089 Query 182749 TTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTCCTCATCTATCCTTTGGGAC 182808 ||||||| |||| || ||||||||||| || ||| || | || || ||||| || | Sbjct 122090 TTGCTTTCTCTGCACCAATTGCTGTATTTGTTTCTGTATTTTTAATTTACCCTTTAGGTC 122149 Query 182809 AGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCCTGTTGT 182868 | || |||||| ||||| || |||||||| || || || ||| | || | || | Sbjct 122150 AATCTGGTTGGTTCTTCGCCCCTAGTTTTGGTGTTGCCGCTATTTTCCGTTTTATCTTAT 122209 Query 182869 TCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTCCATATGATGGGAGTTGCTGGTA 182928 || | || |||||||||||||||||||| ||||| ||||| |||||||||||||||||| Sbjct 122210 TCTTCCAAGGTTTCCACAACTGGACACTTAACCCATTCCACATGATGGGAGTTGCTGGTG 122269 Query 182929 TACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTCACAGTAGAGAATACCTTGTATG 182988 | | |||| || || | ||||||| ||||||| |||||||| ||||| | | | Sbjct 122270 TTTTAGGTGCGGCTCTATTATGTGCTATTCATGGTGCTACAGTAGAAAATACTCTTTTCG 122329 Query 182989 AAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGATTCCACTCAGGAGGAGGAGACCT 183048 ||||||| || || |||||||| || || | | || || | || || || | Sbjct 122330 AAGATGGTGATGGTGCTAACACATTCCGTGCATTTAACCCTACGCAAGCTGAAGAAACTT 122389 Query 183049 ATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATA 183108 | || ||||| ||||| ||| | || ||||||||||| || || || || ||| || | Sbjct 122390 ACTCTATGGTAACAGCTAATAGATTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAACA 122449 Query 183109 AGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTA 183168 | |||||||| |||||||||||||| ||||||||||| | ||||||||| | ||| ||| Sbjct 122450 AACGTTGGTTACACTTCTTTATGTTATTTGTTCCTGTGACAGGTCTTTGGATGTCTGCTA 122509 Query 183169 TTGGGATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATTA 183228 |||| | | || | |||||||| | |||||||| || || || ||||||||| Sbjct 122510 TTGGTGTTGTAGGTTTAGCTCTTAACTTACGTGCTTACGACTTCGTTTCACAAGAGATTC 122569 Query 183229 GAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACAAAGAACATCCTTCTCAATGAAG 183288 | || || |||||||| || || || || |||||||| || ||| | ||||| ||||||| Sbjct 122570 GTGCTGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAAACCTTCTTCTTAATGAAG 122629 Query 183289 GACTACGTGCTTGGTTGGCACCTGCCGATCAACCACATGAAAACTTCATCTTCCCTGAAG 183348 | | ||||||||| |||| | || || ||||| ||| ||| | ||||| |||| Sbjct 122630 GTATCCGTGCTTGGATGGCTGCACAAGACCAGCCACACGAACGCTTAGTATTCCCAGAAG 122689 Query 183349 AAGTTCTACCTAGAGGTAACGCACT 183373 |||| ||||| | |||||||| || Sbjct 122690 AAGTATTACCTCGTGGTAACGCTCT 122714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614565972121600