Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02-
26] 6,720 sequences; 69,711,829 total letters
Query= NC_026927.1
Length=228143
Score E
Sequences producing significant alignments: (Bits) Value
seq6720 769 0.0
>seq6720
Length=135362
Score = 769 bits (852), Expect = 0.0
Identities = 770/994 (77%), Gaps = 4/994 (0%)
Strand=Plus/Minus
Query 174459 TGGGATCAGTTTTGTTCCTGGGTCACATCAACCAACAATCGTCTTTACGTCGGTTGGTTC 174518
|||| || |||||| ||| |||| ||||| | || ||| | ||| |||||||||||
Sbjct 37403 TGGGCTCGTTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTC 37344
Query 174519 GGTGTTCTAATGATTCCTACATTGTTAGCCGCAACTGTATGT-TTCATTATCGCTTTCGT 174577
||||| ||||||| ||| || ||| | || || | ||| |||||||||| ||| |
Sbjct 37343 GGTGTGTTAATGATCCCTTGCTTATTAACAGCTACA-TCTGTATTCATTATCGGCTTCAT 37285
Query 174578 GGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAACCAGTAGCTGGTTCACTCATGTA 174637
| ||||| ||||| || ||||| || |||||||| ||||| ||||||| | | ||
Sbjct 37284 CGCAGCTCCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATA 37225
Query 174638 TGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTACACTT 174697
|| |||||||||||||||||||| || | |||| || |||||||||||||| |||||
Sbjct 37224 CGGTAACAACATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTT 37165
Query 174698 CTACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTCTACAACGGTGGTCCTTTCCA 174757
||||||||| |||||||| || | | ||||| ||| | |||||||||||||||| |||
Sbjct 37164 CTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCA 37105
Query 174758 ACTAGTTGTCTTCCACTTCCTTATT-GGTATCTACGCCTATATGGGACGTGAGTGGGAAC 174816
| || | || | ||||||| ||||| ||| | | || ||||| |||||||||||||
Sbjct 37104 ATTAATCGTTTGCCACTTC-TTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAAC 37046
Query 174817 TCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATACTCTGCACCAGTTGCAG 174876
| ||||| |||||||||||| | |||||||||||||| || ||||| || ||||| || |
Sbjct 37045 TTTCTTACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTG 36986
Query 174877 CAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCAGACGCGATGC 174936
| || | ||||||||| || |||| || |||| |||||||| ||||| || | ||||
Sbjct 36985 CTGCAACTGCAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGC 36926
Query 174937 CCTTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAACATCT 174996
| || ||||||||||| || ||||||| |||| | || |||||||| || || ||||| |
Sbjct 36925 CTTTAGGTATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTT 36866
Query 174997 TGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTGTTCTCAG 175056
| |||||||| ||||||||||| || || || ||||| || ||||||||||| |||||||
Sbjct 36865 TAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAG 36806
Query 175057 CGATGCATGGTTCACTTGTTACCTCTTCACTTGTCCGTGAGACAACTGAAACTGAGTCAC 175116
| ||||| |||||| | || || || ||| | ||||||| || ||||||| || ||
Sbjct 36805 CTATGCACGGTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTG 36746
Query 175117 AGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCCCATG 175176
||| | |||||||| || || |||||||||||||| || |||||||| || || || |
Sbjct 36745 CTAACGAAGGTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACG 36686
Query 175177 GCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTCCACT 175236
| ||||| |||||||| |||||||||||||| |||||||||||||| || ||| | ||||
Sbjct 36685 GTTACTTTGGTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACT 36626
Query 175237 TCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCACAA 175296
|||||||||| || ||||| || | | || |||||||| || | ||| | || || |
Sbjct 36625 TCTTCTTAGCTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTA 36566
Query 175297 TGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGTAGAG 175356
||||||||||| | || || |||||||||||||| || ||| | || ||||||| | |
Sbjct 36565 TGGCATTCAACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTG 36506
Query 175357 TATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTAATGCATG 175416
|||| ||||| ||||| || | | ||| | ||| | || |||||||||||||| |
Sbjct 36505 TATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACG 36446
Query 175417 AGAGAAATGCACACAACTTCCCACTAGATTTGGC 175450
| | || || |||||||||||| |||| || ||
Sbjct 36445 AACGTAACGCTCACAACTTCCCATTAGACTTAGC 36412
Score = 769 bits (852), Expect = 0.0
Identities = 770/994 (77%), Gaps = 4/994 (0%)
Strand=Plus/Plus
Query 174459 TGGGATCAGTTTTGTTCCTGGGTCACATCAACCAACAATCGTCTTTACGTCGGTTGGTTC 174518
|||| || |||||| ||| |||| ||||| | || ||| | ||| |||||||||||
Sbjct 108245 TGGGCTCGTTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTC 108304
Query 174519 GGTGTTCTAATGATTCCTACATTGTTAGCCGCAACTGTATGT-TTCATTATCGCTTTCGT 174577
||||| ||||||| ||| || ||| | || || | ||| |||||||||| ||| |
Sbjct 108305 GGTGTGTTAATGATCCCTTGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCAT 108363
Query 174578 GGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAACCAGTAGCTGGTTCACTCATGTA 174637
| ||||| ||||| || ||||| || |||||||| ||||| ||||||| | | ||
Sbjct 108364 CGCAGCTCCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATA 108423
Query 174638 TGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTACACTT 174697
|| |||||||||||||||||||| || | |||| || |||||||||||||| |||||
Sbjct 108424 CGGTAACAACATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTT 108483
Query 174698 CTACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTCTACAACGGTGGTCCTTTCCA 174757
||||||||| |||||||| || | | ||||| ||| | |||||||||||||||| |||
Sbjct 108484 CTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCA 108543
Query 174758 ACTAGTTGTCTTCCACTTCCTTATT-GGTATCTACGCCTATATGGGACGTGAGTGGGAAC 174816
| || | || | |||||| |||||| ||| | | || ||||| |||||||||||||
Sbjct 108544 ATTAATCGTTTGCCACTT-CTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAAC 108602
Query 174817 TCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATACTCTGCACCAGTTGCAG 174876
| ||||| |||||||||||| | |||||||||||||| || ||||| || ||||| || |
Sbjct 108603 TTTCTTACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTG 108662
Query 174877 CAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCAGACGCGATGC 174936
| || | ||||||||| || |||| || |||| |||||||| ||||| || | ||||
Sbjct 108663 CTGCAACTGCAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGC 108722
Query 174937 CCTTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAACATCT 174996
| || ||||||||||| || ||||||| |||| | || |||||||| || || ||||| |
Sbjct 108723 CTTTAGGTATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTT 108782
Query 174997 TGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTGTTCTCAG 175056
| |||||||| ||||||||||| || || || ||||| || ||||||||||| |||||||
Sbjct 108783 TAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAG 108842
Query 175057 CGATGCATGGTTCACTTGTTACCTCTTCACTTGTCCGTGAGACAACTGAAACTGAGTCAC 175116
| ||||| |||||| | || || || ||| | ||||||| || ||||||| || ||
Sbjct 108843 CTATGCACGGTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTG 108902
Query 175117 AGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCCCATG 175176
||| | |||||||| || || |||||||||||||| || |||||||| || || || |
Sbjct 108903 CTAACGAAGGTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACG 108962
Query 175177 GCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTCCACT 175236
| ||||| |||||||| |||||||||||||| |||||||||||||| || ||| | ||||
Sbjct 108963 GTTACTTTGGTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACT 109022
Query 175237 TCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCACAA 175296
|||||||||| || ||||| || | | || |||||||| || | ||| | || || |
Sbjct 109023 TCTTCTTAGCTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTA 109082
Query 175297 TGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGTAGAG 175356
||||||||||| | || || |||||||||||||| || ||| | || ||||||| | |
Sbjct 109083 TGGCATTCAACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTG 109142
Query 175357 TATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTAATGCATG 175416
|||| ||||| ||||| || | | ||| | ||| | || |||||||||||||| |
Sbjct 109143 TATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACG 109202
Query 175417 AGAGAAATGCACACAACTTCCCACTAGATTTGGC 175450
| | || || |||||||||||| |||| || ||
Sbjct 109203 AACGTAACGCTCACAACTTCCCATTAGACTTAGC 109236
Score = 493 bits (546), Expect = 2e-134
Identities = 673/937 (72%), Gaps = 8/937 (1%)
Strand=Plus/Plus
Query 175928 TGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGTCACGAGTTGGTACAC 175987
||| ||| |||| | || || ||| ||||||| ||||| ||||| || |||||||||
Sbjct 121779 TGCGTATTTTGCATTAGGTGGTTGGTTTACTGGGACAACATTTGTTACTTCTTGGTACAC 121838
Query 175988 CCATGGTCTTGCTTCTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCGGCTGTCTCGAC 176047
|||||| | || |||| || | || ||| |||||| | || || || || |||||
Sbjct 121839 ACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCAGTTTCGAC 121898
Query 176048 TCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAATCTCAGGGCGA 176107
||| || | ||||| ||||||| | | | ||||||| |||||| |||| || ||
Sbjct 121899 TCCAGCAAACAGTATGGCTCATTCTTTATTATTTATTTGGGGACCTGAAGCTCAAGGTGA 121958
Query 176108 CTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGCTCTCCACGGTGCCTT 176167
||| || ||| ||| | || || | ||| | ||||| || || || ||||| ||
Sbjct 121959 CTTTACACGTTGGTGTCAATTAGGTGGTTTATGGACTTTTGTAGCACTGCATGGTGCTTT 122018
Query 176168 CGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGACTCATTGGTA----TCC 176223
| | | ||||| || ||| | ||||| |||||| | ||| | ||| ||| | |
Sbjct 122019 TGGTTTAATTGGTTTTATGTTACGTCAATTTGAAATTGCACGT-TCA---GTAAACTTAC 122074
Query 176224 GTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAGTGTGTTTCTTC 176283
|||| || ||||| ||||| ||| || || || ||||||||||| ||| ||| |
Sbjct 122075 GTCCATATAACGCAATTGCTTTCTCTGCACCAATTGCTGTATTTGTTTCTGTATTTTTAA 122134
Query 176284 TATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCT 176343
| ||||| ||||||||||| |||||||| ||||| |||||||| || || || |
Sbjct 122135 TTTACCCTTTAGGTCAATCTGGTTGGTTCTTCGCCCCTAGTTTTGGTGTTGCCGCTATTT 122194
Query 176344 TTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCCCTTCCATATGA 176403
| | || | || || | || |||||||||||||||||||| ||||| ||||| ||||
Sbjct 122195 TCCGTTTTATCTTATTCTTCCAAGGTTTCCACAACTGGACACTTAACCCATTCCACATGA 122254
Query 176404 TGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGGCGTTACTGTTG 176463
|||||||||||||| | |||||| || ||| ||| ||| || ||||| | ||| || |
Sbjct 122255 TGGGAGTTGCTGGTGTTTTAGGTGCGGCTCTATTATGTGCTATTCATGGTGCTACAGTAG 122314
Query 176464 AAAATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGTTCGATTCCACGC 176523
||||||| || | |||||||| || ||||| ||| ||| || | | ||||
Sbjct 122315 AAAATACTCTTTTCGAAGATGGTGATGGTGCTAACACATTCCGTGCATTTAACCCTACGC 122374
Query 176524 AGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGG 176583
| | ||||| || || || ||||| || || || | |||||||| ||||| || || |
Sbjct 122375 AAGCTGAAGAAACTTACTCTATGGTAACAGCTAATAGATTCTGGTCACAAATTTTTGGTG 122434
Query 176584 TTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATGGGTC 176643
| || ||| || || |||||| | |||||||||||||| ||||| ||||| | ||||
Sbjct 122435 TAGCTTTTTCAAACAAACGTTGGTTACACTTCTTTATGTTATTTGTTCCTGTGACAGGTC 122494
Query 176644 TTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTG 176703
||||| | || |||||| | | || | |||||||| | |||||||| || || |
Sbjct 122495 TTTGGATGTCTGCTATTGGTGTTGTAGGTTTAGCTCTTAACTTACGTGCTTACGACTTCG 122554
Query 176704 TGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTACACAAAGAACA 176763
| ||||||||| | || || |||||||| || ||||||||||||||||| || |||
Sbjct 122555 TTTCACAAGAGATTCGTGCTGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAAACC 122614
Query 176764 TCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAACCACATGAGTCAT 176823
| |||||||| ||||| | | || |||||||| | || || ||||| || |
Sbjct 122615 TTCTTCTTAATGAAGGTATCCGTGCTTGGATGGCTGCACAAGACCAGCCACACGAACGCT 122674
Query 176824 TTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860
| ||||||||||||||||| ||||| | ||||||||
Sbjct 122675 TAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGC 122711
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 729868285913600
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