Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq6720 729 0.0 >seq6720 Length=135362 Score = 729 bits (808), Expect = 0.0 Identities = 749/975 (77%), Gaps = 8/975 (1%) Strand=Plus/Minus Query 177849 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177908 || || |||||| | ||||| || | ||||| | || ||||||||||||| || | Sbjct 37394 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 37335 Query 177909 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 177967 ||||| || | || |||| || |||||| ||||| ||| |||| |||| ||||| Sbjct 37334 ATGATCCCTTGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAGCTCC 37276 Query 177968 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAA 178027 || || || ||||| || |||||||| || || ||||||| | | || || ||||| Sbjct 37275 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAA 37216 Query 178028 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 178087 ||||||||||||||| || | || | || |||||||| |||||||||||||| || || Sbjct 37215 CATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAAT 37156 Query 178088 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 178147 |||||||| || || | || |||||| | || ||||||||||||| |||| | | || Sbjct 37155 TTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 37096 Query 178148 ATTTCACTTCCTCATTGGTATCTATGCAT---ACATGGGACGTGAGTGGGAACTTTCATA 178204 | |||||| | | ||| | ||||| ||||||| ||||||||||||||||| || Sbjct 37095 TTGCCACTTCTTATTAGGTGT---TGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTA 37039 Query 178205 CCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATC 178264 ||||||||||||||| || ||||||||||| || ||||| ||||||||||| || ||| | Sbjct 37038 CCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAAC 36979 Query 178265 GGCAGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGG 178324 ||||||||| | |||| || |||| |||||||| || ||||| | ||||| | || Sbjct 36978 TGCAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGG 36919 Query 178325 CATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCA 178384 ||||||||||| ||||||| |||| | || |||||||| || ||||||||| | ||||| Sbjct 36918 TATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCA 36859 Query 178385 CCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCA 178444 ||| ||||||||||| ||||| || |||||||| ||||||||| | ||| || ||||| Sbjct 36858 CCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCA 36799 Query 178445 CGGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCACAGAACTA 178504 |||||| || || || || ||| | | |||||||| ||||||| ||||| ||| | Sbjct 36798 CGGTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGA 36739 Query 178505 TGGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTT 178564 ||||| || || || |||||||||||||| ||||||||||| || ||||| || ||||| Sbjct 36738 AGGTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTT 36679 Query 178565 CGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCT 178624 |||||||| ||||||||||| || |||||||||||||| |||||| | ||||||||| | Sbjct 36678 TGGTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTT 36619 Query 178625 CGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATT 178684 || || ||||| ||| | | || |||||||| || | || || || |||||||| Sbjct 36618 AGCTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATT 36559 Query 178685 TAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAA 178744 ||| | || || |||||||||||||| || | | || |||||| ||||| | || Sbjct 36558 CAACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAA 36499 Query 178745 CACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAA 178804 ||| ||||| ||| | |||||||||| | || |||||||| |||||||| || || Sbjct 36498 CACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAA 36439 Query 178805 CGCGCACAACTTCCC 178819 ||| ||||||||||| Sbjct 36438 CGCTCACAACTTCCC 36424 Score = 729 bits (808), Expect = 0.0 Identities = 749/975 (77%), Gaps = 8/975 (1%) Strand=Plus/Plus Query 177849 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177908 || || |||||| | ||||| || | ||||| | || ||||||||||||| || | Sbjct 108254 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 108313 Query 177909 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 177967 ||||| || | || |||| || |||||| ||||| ||| |||| |||| ||||| Sbjct 108314 ATGATCCCTTGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAGCTCC 108372 Query 177968 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAA 178027 || || || ||||| || |||||||| || || ||||||| | | || || ||||| Sbjct 108373 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAA 108432 Query 178028 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 178087 ||||||||||||||| || | || | || |||||||| |||||||||||||| || || Sbjct 108433 CATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAAT 108492 Query 178088 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 178147 |||||||| || || | || |||||| | || ||||||||||||| |||| | | || Sbjct 108493 TTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 108552 Query 178148 ATTTCACTTCCTCATTGGTATCTATGCA---TACATGGGACGTGAGTGGGAACTTTCATA 178204 | |||||| | | ||| | |||| |||||||| ||||||||||||||||| || Sbjct 108553 TTGCCACTTCTTATTAGGTGT---TGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTA 108609 Query 178205 CCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATC 178264 ||||||||||||||| || ||||||||||| || ||||| ||||||||||| || ||| | Sbjct 108610 CCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAAC 108669 Query 178265 GGCAGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGG 178324 ||||||||| | |||| || |||| |||||||| || ||||| | ||||| | || Sbjct 108670 TGCAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGG 108729 Query 178325 CATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCA 178384 ||||||||||| ||||||| |||| | || |||||||| || ||||||||| | ||||| Sbjct 108730 TATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCA 108789 Query 178385 CCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCA 178444 ||| ||||||||||| ||||| || |||||||| ||||||||| | ||| || ||||| Sbjct 108790 CCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCA 108849 Query 178445 CGGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCACAGAACTA 178504 |||||| || || || || ||| | | |||||||| ||||||| ||||| ||| | Sbjct 108850 CGGTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGA 108909 Query 178505 TGGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTT 178564 ||||| || || || |||||||||||||| ||||||||||| || ||||| || ||||| Sbjct 108910 AGGTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTT 108969 Query 178565 CGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCT 178624 |||||||| ||||||||||| || |||||||||||||| |||||| | ||||||||| | Sbjct 108970 TGGTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTT 109029 Query 178625 CGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATT 178684 || || ||||| ||| | | || |||||||| || | || || || |||||||| Sbjct 109030 AGCTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATT 109089 Query 178685 TAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAA 178744 ||| | || || |||||||||||||| || | | || |||||| ||||| | || Sbjct 109090 CAACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAA 109149 Query 178745 CACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAA 178804 ||| ||||| ||| | |||||||||| | || |||||||| |||||||| || || Sbjct 109150 CACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAA 109209 Query 178805 CGCGCACAACTTCCC 178819 ||| ||||||||||| Sbjct 109210 CGCTCACAACTTCCC 109224 Score = 480 bits (532), Expect = 1e-130 Identities = 699/982 (71%), Gaps = 4/982 (0%) Strand=Plus/Plus Query 179253 GATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTTCCCACTGCTTATCTTGCC 179312 || || ||||| ||||| |||||||| || || || | | || ||| ||| |||| Sbjct 121732 GACCGTTTTGTTTTTGTAGGTTGGTCAGGTCTTCTTTTATTACCTTGTGCGTATTTTGCA 121791 Query 179313 ATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGGTACACCCACGGTCTTGCT 179372 | || |||||| ||||||||||| | |||||||| ||||||||| || ||| | || Sbjct 121792 TTAGGTGGTTGGTTTACTGGGACAACATTTGTTACTTCTTGGTACACACATGGTTTAGCA 121851 Query 179373 AGTTCCTATCTTGAGGGTGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGATGCT 179432 | ||| || | || ||| |||||| | || || || || ||||| || || | | Sbjct 121852 ACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCAGTTTCGACTCCAGCAAACAGT 121911 Query 179433 ATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGG-GAATTTCCAGCGGTG 179491 |||| ||||||| | | | ||||||| ||||| |||| || || ||| || || || Sbjct 121912 ATGGCTCATTCTTTATTATTTATTTGGGGACCTGAAGCTCAAGGTGACTTTACA-CGTTG 121970 Query 179492 GTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGG 179551 ||| ||| | || || | |||| ||| || || || || ||||| || | | | ||||| Sbjct 121971 GTGTCAATTAGGTGGTTTATGGACTTTTGTAGCACTGCATGGTGCTTTTGGTTTAATTGG 122030 Query 179552 TTTCATGCTTAGGCAATTTGAACTTGCTCGCCTGATTGGTATCA-GACCTTACAATGCGA 179610 ||| ||| | | ||||||||| |||| || | | | | | | || || || || | Sbjct 122031 TTTTATGTTACGTCAATTTGAAATTGCACGT-TCAGTAAACTTACGTCCATATAACGCAA 122089 Query 179611 TTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTCCTCATCTATCCTTTGGGAC 179670 ||||||| |||| || ||||||||||| || ||| || | || || ||||| || | Sbjct 122090 TTGCTTTCTCTGCACCAATTGCTGTATTTGTTTCTGTATTTTTAATTTACCCTTTAGGTC 122149 Query 179671 AGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCTTGCTGT 179730 | || |||||| ||||| || |||||||| || || || ||| | || | | | Sbjct 122150 AATCTGGTTGGTTCTTCGCCCCTAGTTTTGGTGTTGCCGCTATTTTCCGTTTTATCTTAT 122209 Query 179731 TCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCATATGATGGGAGTTGCTGGTA 179790 || | || ||||||||||||||||| || ||||| ||||| |||||||||||||||||| Sbjct 122210 TCTTCCAAGGTTTCCACAACTGGACACTTAACCCATTCCACATGATGGGAGTTGCTGGTG 122269 Query 179791 TACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTACTGTAGAGAATACATTGTATG 179850 | |||| | || || | ||||||| ||||| | ||| ||||| ||||| | | | Sbjct 122270 TTTTAGGTGCGGCTCTATTATGTGCTATTCATGGTGCTACAGTAGAAAATACTCTTTTCG 122329 Query 179851 AAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTT 179910 ||||||| || || || || || || ||| | | || || | ||||| |||| Sbjct 122330 AAGATGGTGATGGTGCTAACACATTCCGTGCATTTAACCCTACGCAAGCTGAAGAAACTT 122389 Query 179911 ATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACA 179970 | |||||||| || || || | |||||||| || || || ||| | || ||||| |||| Sbjct 122390 ACTCTATGGTAACAGCTAATAGATTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAACA 122449 Query 179971 AGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTA 180030 | || ||| | || || || ||||| ||||| ||||| | ||||| |||| || ||| Sbjct 122450 AACGTTGGTTACACTTCTTTATGTTATTTGTTCCTGTGACAGGTCTTTGGATGTCTGCTA 122509 Query 180031 TTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCA 180090 |||| || | ||| | ||||| ||| | ||||||||||| ||||| || ||||| Sbjct 122510 TTGGTGTTGTAGGTTTAGCTCTTAACTTACGTGCTTACGACTTCGTTTCACAAGAGATTC 122569 Query 180091 GAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCTTCTCAATGAAG 180150 | || || |||||||| || ||||| || |||||||| || ||| ||||||| ||||||| Sbjct 122570 GTGCTGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAAACCTTCTTCTTAATGAAG 122629 Query 180151 GACTACGTGCATGGTTGGCACCAGTTGATCAACCACATGAGTCATTCGTATTCCCAGAAG 180210 | | ||||| ||| |||| || || || ||||| || || ||||||||||||| Sbjct 122630 GTATCCGTGCTTGGATGGCTGCACAAGACCAGCCACACGAACGCTTAGTATTCCCAGAAG 122689 Query 180211 AAGTTCTGCCAAGAGGTAATGC 180232 |||| | || | ||||| || Sbjct 122690 AAGTATTACCTCGTGGTAACGC 122711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605958695193600