Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq6720 744 0.0 >seq6720 Length=135362 Score = 744 bits (824), Expect = 0.0 Identities = 763/993 (77%), Gaps = 8/993 (1%) Strand=Plus/Minus Query 158378 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 158437 ||| || |||||| | ||||| || | ||||| | || ||||||||||||| || | Sbjct 37395 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTT 37336 Query 158438 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 158496 ||||| || | || |||| || |||||| ||||| ||| |||| |||| |||| Sbjct 37335 AATGATCCCTTGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAGCTC 37277 Query 158497 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 158556 | || || || ||||| || |||||||| || || ||||||| | | || ||||||| Sbjct 37276 CTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACA 37217 Query 158557 ACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 158616 |||||||||||||||| || | || | || |||||||| |||||||||||||| || | Sbjct 37216 ACATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAA 37157 Query 158617 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 158676 | |||||||| || || | || |||||| | || ||||||||||||| |||| | | | Sbjct 37156 TTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCG 37097 Query 158677 TCTTTCACTTCCTTATCGGCATCTATGCATAT---ATGGGACGTGAATGGGAACTTTCAT 158733 | | |||||| | | || | ||||| | ||||| ||||| ||||||||||| | Sbjct 37096 TTTGCCACTTCTTATTAGGTGT---TGCATCTTACATGGGTCGTGAGTGGGAACTTTCTT 37040 Query 158734 ACCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCAT 158793 |||| ||||||||||| || ||||||||||| || || || || ||||| ||||| ||| Sbjct 37039 ACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAA 36980 Query 158794 CTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTG 158853 |||| |||||| | |||| || |||| |||||||||||||| |||| ||||||| | | Sbjct 36979 CTGCAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAG 36920 Query 158854 GTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGC 158913 |||||||||||||||| |||| |||| | ||||||||||| || |||||||| | |||| Sbjct 36919 GTATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGC 36860 Query 158914 ACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGC 158973 |||| ||||| ||| | ||||||||||| ||||| ||||| || | ||||| ||||||| Sbjct 36859 ACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGC 36800 Query 158974 ATGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACT 159033 | || | || ||||| ||| | | |||||||| ||||||| || || ||| Sbjct 36799 ACGGTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACG 36740 Query 159034 ATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACT 159093 | |||||||| || || ||||||||||| || || || ||||| || || || ||||||| Sbjct 36739 AAGGTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACT 36680 Query 159094 TCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCC 159153 | |||||||| |||||||||||||| |||||||||||||| ||||| || ||||||||| Sbjct 36679 TTGGTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCT 36620 Query 159154 TTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCAT 159213 | ||||| ||||| || || |||| |||||||| || | || | ||||| ||||||| Sbjct 36619 TAGCTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCAT 36560 Query 159214 TCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGA 159273 ||||| | ||||| |||||||||||||| || | ||||| || |||||||| || | Sbjct 36559 TCAACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAA 36500 Query 159274 ACACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGTA 159333 |||| ||||| || | | |||||||| | ||||||||||| ||||| || |||| Sbjct 36499 ACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTA 36440 Query 159334 ACGCACACAACTTCCCACTCGACCTTGCTGCTG 159366 |||| |||||||||||| | ||| | ||| ||| Sbjct 36439 ACGCTCACAACTTCCCATTAGACTTAGCTTCTG 36407 Score = 744 bits (824), Expect = 0.0 Identities = 763/993 (77%), Gaps = 8/993 (1%) Strand=Plus/Plus Query 158378 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 158437 ||| || |||||| | ||||| || | ||||| | || ||||||||||||| || | Sbjct 108253 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTT 108312 Query 158438 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 158496 ||||| || | || |||| || |||||| ||||| ||| |||| |||| |||| Sbjct 108313 AATGATCCCTTGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAGCTC 108371 Query 158497 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 158556 | || || || ||||| || |||||||| || || ||||||| | | || ||||||| Sbjct 108372 CTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACA 108431 Query 158557 ACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 158616 |||||||||||||||| || | || | || |||||||| |||||||||||||| || | Sbjct 108432 ACATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAA 108491 Query 158617 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 158676 | |||||||| || || | || |||||| | || ||||||||||||| |||| | | | Sbjct 108492 TTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCG 108551 Query 158677 TCTTTCACTTCCTTATCGGCATCTATGCATAT---ATGGGACGTGAATGGGAACTTTCAT 158733 | | |||||| | | || | ||||| | ||||| ||||| ||||||||||| | Sbjct 108552 TTTGCCACTTCTTATTAGGTGT---TGCATCTTACATGGGTCGTGAGTGGGAACTTTCTT 108608 Query 158734 ACCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCAT 158793 |||| ||||||||||| || ||||||||||| || || || || ||||| ||||| ||| Sbjct 108609 ACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAA 108668 Query 158794 CTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTG 158853 |||| |||||| | |||| || |||| |||||||||||||| |||| ||||||| | | Sbjct 108669 CTGCAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAG 108728 Query 158854 GTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGC 158913 |||||||||||||||| |||| |||| | ||||||||||| || |||||||| | |||| Sbjct 108729 GTATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGC 108788 Query 158914 ACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGC 158973 |||| ||||| ||| | ||||||||||| ||||| ||||| || | ||||| ||||||| Sbjct 108789 ACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGC 108848 Query 158974 ATGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACT 159033 | || | || ||||| ||| | | |||||||| ||||||| || || ||| Sbjct 108849 ACGGTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACG 108908 Query 159034 ATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACT 159093 | |||||||| || || ||||||||||| || || || ||||| || || || ||||||| Sbjct 108909 AAGGTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACT 108968 Query 159094 TCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCC 159153 | |||||||| |||||||||||||| |||||||||||||| ||||| || ||||||||| Sbjct 108969 TTGGTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCT 109028 Query 159154 TTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCAT 159213 | ||||| ||||| || || |||| |||||||| || | || | ||||| ||||||| Sbjct 109029 TAGCTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCAT 109088 Query 159214 TCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGA 159273 ||||| | ||||| |||||||||||||| || | ||||| || |||||||| || | Sbjct 109089 TCAACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAA 109148 Query 159274 ACACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGTA 159333 |||| ||||| || | | |||||||| | ||||||||||| ||||| || |||| Sbjct 109149 ACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTA 109208 Query 159334 ACGCACACAACTTCCCACTCGACCTTGCTGCTG 159366 |||| |||||||||||| | ||| | ||| ||| Sbjct 109209 ACGCTCACAACTTCCCATTAGACTTAGCTTCTG 109241 Score = 488 bits (540), Expect = 6e-133 Identities = 703/991 (71%), Gaps = 8/991 (1%) Strand=Plus/Plus Query 159929 GATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 159988 || ||||| |||||||| || ||||| || |||||| | | || ||| ||| |||| Sbjct 121732 GACCGTTTTGTTTTTGTAGGTTGGTCAGGTCTTCTTTTATTACCTTGTGCGTATTTTGCA 121791 Query 159989 ATTGGCGGTTGGCTTACTGGAACAACTTTCGCAACGAGCTGGTATACCCATGGACTCGCT 160048 | || |||||| ||||||| ||||| || | || ||||| || ||||| | || Sbjct 121792 TTAGGTGGTTGGTTTACTGGGACAACATTTGTTACTTCTTGGTACACACATGGTTTAGCA 121851 Query 160049 AGTTCCTATCTTGAGGGTGCAAACTTTCTTACAGCGTCAGTTAGCACTCCAGCTGACGCT 160108 | ||| || | || ||| ||||| | || || ||||| |||||||| || | Sbjct 121852 ACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCAGTTTCGACTCCAGCAAACAGT 121911 Query 160109 ATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGG 160168 |||| ||||||| | | || | ||||| ||||| |||||||| || || | ||| Sbjct 121912 ATGGCTCATTCTTTATTATTTATTTGGGGACCTGAAGCTCAAGGTGACTTTACACGTTGG 121971 Query 160169 ATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGA 160228 ||| | || || | |||| |||||| ||||| |||||||| || | ||||||| Sbjct 121972 TGTCAATTAGGTGGTTTATGGACTTTTGTAGCACTGCATGGTGCTTTTGGTTTAATTGGT 122031 Query 160229 TTCATGCTCCGTCAGTTTGAACTGGCACGTCTCATCGGTA----TCCGTCCTTACAATGC 160284 || ||| | ||||| |||||| | |||||| || ||| | ||||| || || || Sbjct 122032 TTTATGTTACGTCAATTTGAAATTGCACGT----TCAGTAAACTTACGTCCATATAACGC 122087 Query 160285 TATTGCGTTCTCTGGTCCTATTGCTGTCTTTGTCAGCGTATTCCTCATCTACCCATTGGG 160344 ||||| ||||||| || |||||||| ||||| ||||| | || ||||| || || Sbjct 122088 AATTGCTTTCTCTGCACCAATTGCTGTATTTGTTTCTGTATTTTTAATTTACCCTTTAGG 122147 Query 160345 TCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTT 160404 ||| || ||||||| ||||| || ||||| || || || || || | || | || Sbjct 122148 TCAATCTGGTTGGTTCTTCGCCCCTAGTTTTGGTGTTGCCGCTATTTTCCGTTTTATCTT 122207 Query 160405 GTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGATGGGAGTTGCTGG 160464 ||| | ||||| || ||||||||||| |||||||| ||||| ||||||||||||||||| Sbjct 122208 ATTCTTCCAAGGTTTCCACAACTGGACACTTAACCCATTCCACATGATGGGAGTTGCTGG 122267 Query 160465 TATACTAGGAGGAGCACTGCTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGTA 160524 | | |||| | || || | |||| || ||||| | ||| ||||| || || || | Sbjct 122268 TGTTTTAGGTGCGGCTCTATTATGTGCTATTCATGGTGCTACAGTAGAAAATACTCTTTT 122327 Query 160525 TGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGAC 160584 |||||||| || || || || || || ||| | | || || | ||||| || Sbjct 122328 CGAAGATGGTGATGGTGCTAACACATTCCGTGCATTTAACCCTACGCAAGCTGAAGAAAC 122387 Query 160585 TTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAA 160644 ||| |||||||| || || || | |||||||| || || || ||| | || ||||| || Sbjct 122388 TTACTCTATGGTAACAGCTAATAGATTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAA 122447 Query 160645 CAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCAG 160704 ||| || ||| | || || || ||||| ||||| ||||| | |||||||||| || Sbjct 122448 CAAACGTTGGTTACACTTCTTTATGTTATTTGTTCCTGTGACAGGTCTTTGGATGTCTGC 122507 Query 160705 TATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGAT 160764 |||||| || | ||| | ||||| || | ||||||||||| ||||| |||||||| Sbjct 122508 TATTGGTGTTGTAGGTTTAGCTCTTAACTTACGTGCTTACGACTTCGTTTCACAAGAGAT 122567 Query 160765 TAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAGAACATCCTACTGAATGA 160824 | | || || ||||||||||||||||| || |||||||| || ||| | || || ||||| Sbjct 122568 TCGTGCTGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAAACCTTCTTCTTAATGA 122627 Query 160825 AGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGA 160884 ||| | ||||| ||| | || | ||||| || || || ||| | |||||||| Sbjct 122628 AGGTATCCGTGCTTGGATGGCTGCACAAGACCAGCCACACGAACGCTTAGTATTCCCAGA 122687 Query 160885 AGAAGTTCTTCCTAGAGGCAACGCCCTTTAA 160915 |||||| | ||| | || ||||| || ||| Sbjct 122688 AGAAGTATTACCTCGTGGTAACGCTCTATAA 122718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552427192217600