Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq6720 771 0.0 seq6719 82.4 9e-11 >seq6720 Length=135362 Score = 771 bits (854), Expect = 0.0 Identities = 766/989 (77%), Gaps = 2/989 (0%) Strand=Plus/Minus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 || || |||||| | || || || | || ||||| || | ||||||||||||||| | Sbjct 37394 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 37335 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 178979 ||||| ||| || | | || || |||||| ||||| | | ||| | ||||| || Sbjct 37334 ATGATCCCTTGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAGCTCC 37276 Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 179039 ||| || ||||| || || |||||||| || || ||||||| | | || || ||||| Sbjct 37275 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAA 37216 Query 179040 CATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCAT 179099 |||||||||||||||| || |||| | || |||||||| ||||| ||||||||||| || Sbjct 37215 CATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAAT 37156 Query 179100 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGT 179159 |||||||| || || | || |||||| | || ||||||||||||| |||| | | || Sbjct 37155 TTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 37096 Query 179160 CTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 179219 | ||||||| | | || | | || ||||| ||||||||||||||||||||||| Sbjct 37095 TTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 37036 Query 179220 TCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGC 179279 | ||||||||||||| |||||||||||||| ||||| || ||||| |||||||| | ||| Sbjct 37035 TTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGC 36976 Query 179280 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTAT 179339 ||||||| | |||| || |||| ||||||||||||||||||| ||||||| | ||||| Sbjct 36975 AGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 36916 Query 179340 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 179399 |||||||||||| |||| |||| | ||||||||||| || |||||||| | |||||||| Sbjct 36915 CTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCC 36856 Query 179400 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 179459 ||||| ||| | ||||||||||| ||||| ||||| || | ||||| ||||||||||| Sbjct 36855 ATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGG 36796 Query 179460 AAGTCTCGTTACTTCCTCGCTTGTTCGTGAAACAACTGAGACAGAGTCACAGAACTATGG 179519 | || ||||| || | | |||||||| ||||| | || || ||| | || Sbjct 36795 TTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGG 36736 Query 179520 TTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCGG 179579 ||| || || || |||||||||||||| || |||||||| || ||||| || ||||| || Sbjct 36735 TTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGG 36676 Query 179580 TCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTTGC 179639 |||||| ||||||||||| ||||| || |||||||| || || || ||||||||| | || Sbjct 36675 TCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGC 36616 Query 179640 TGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTCAA 179699 ||| |||||||| || |||| |||||||||||| | || | ||||| ||||| ||||| Sbjct 36615 TGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCAA 36556 Query 179700 CCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAACAC 179759 | | ||||| |||||||||||||| || | |||| ||||| ||||| | ||||| Sbjct 36555 CTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACAC 36496 Query 179760 ATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAACGC 179819 ||||| ||| | | |||||||| || ||||||||||| ||||| || |||||||| Sbjct 36495 TTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGC 36436 Query 179820 ACACAACTTCCCACTCGACCTTGCTGCTG 179848 |||||||||||| | ||| | ||| ||| Sbjct 36435 TCACAACTTCCCATTAGACTTAGCTTCTG 36407 Score = 771 bits (854), Expect = 0.0 Identities = 766/989 (77%), Gaps = 2/989 (0%) Strand=Plus/Plus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 || || |||||| | || || || | || ||||| || | ||||||||||||||| | Sbjct 108254 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 108313 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 178979 ||||| ||| || | | || || |||||| ||||| | | ||| | ||||| || Sbjct 108314 ATGATCCCTTGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAGCTCC 108372 Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 179039 ||| || ||||| || || |||||||| || || ||||||| | | || || ||||| Sbjct 108373 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAA 108432 Query 179040 CATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCAT 179099 |||||||||||||||| || |||| | || |||||||| ||||| ||||||||||| || Sbjct 108433 CATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAAT 108492 Query 179100 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGT 179159 |||||||| || || | || |||||| | || ||||||||||||| |||| | | || Sbjct 108493 TTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 108552 Query 179160 CTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 179219 | ||||||| | | || | | || ||||| ||||||||||||||||||||||| Sbjct 108553 TTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 108612 Query 179220 TCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGC 179279 | ||||||||||||| |||||||||||||| ||||| || ||||| |||||||| | ||| Sbjct 108613 TTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGC 108672 Query 179280 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTAT 179339 ||||||| | |||| || |||| ||||||||||||||||||| ||||||| | ||||| Sbjct 108673 AGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 108732 Query 179340 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 179399 |||||||||||| |||| |||| | ||||||||||| || |||||||| | |||||||| Sbjct 108733 CTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCC 108792 Query 179400 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 179459 ||||| ||| | ||||||||||| ||||| ||||| || | ||||| ||||||||||| Sbjct 108793 ATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGG 108852 Query 179460 AAGTCTCGTTACTTCCTCGCTTGTTCGTGAAACAACTGAGACAGAGTCACAGAACTATGG 179519 | || ||||| || | | |||||||| ||||| | || || ||| | || Sbjct 108853 TTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGG 108912 Query 179520 TTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCGG 179579 ||| || || || |||||||||||||| || |||||||| || ||||| || ||||| || Sbjct 108913 TTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGG 108972 Query 179580 TCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTTGC 179639 |||||| ||||||||||| ||||| || |||||||| || || || ||||||||| | || Sbjct 108973 TCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGC 109032 Query 179640 TGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTCAA 179699 ||| |||||||| || |||| |||||||||||| | || | ||||| ||||| ||||| Sbjct 109033 TGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCAA 109092 Query 179700 CCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAACAC 179759 | | ||||| |||||||||||||| || | |||| ||||| ||||| | ||||| Sbjct 109093 CTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACAC 109152 Query 179760 ATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAACGC 179819 ||||| ||| | | |||||||| || ||||||||||| ||||| || |||||||| Sbjct 109153 TTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGC 109212 Query 179820 ACACAACTTCCCACTCGACCTTGCTGCTG 179848 |||||||||||| | ||| | ||| ||| Sbjct 109213 TCACAACTTCCCATTAGACTTAGCTTCTG 109241 Score = 500 bits (554), Expect = 1e-136 Identities = 706/986 (72%), Gaps = 12/986 (1%) Strand=Plus/Plus Query 180051 GACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTCTTCCCACTGCTTATCTTGCC 180110 ||||| ||||| ||||| || ||||| || || || | | || ||| ||| |||| Sbjct 121732 GACCGTTTTGTTTTTGTAGGTTGGTCAGGTCTTCTTTTATTACCTTGTGCGTATTTTGCA 121791 Query 180111 ATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACCCACGGTCTTGCT 180170 | || |||||| ||||||| ||| | ||||| || ||||||||| || ||| | || Sbjct 121792 TTAGGTGGTTGGTTTACTGGGACAACATTTGTTACTTCTTGGTACACACATGGTTTAGCA 121851 Query 180171 TCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGACGCT 180230 |||| || | |||||| |||||| | || || || || ||||| || || || | Sbjct 121852 ACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCAGTTTCGACTCCAGCAAACAGT 121911 Query 180231 ATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGG-GAATTTCCAACGGTG 180289 |||| ||||||| | | | ||||||| ||||| |||| || || ||| || || || Sbjct 121912 ATGGCTCATTCTTTATTATTTATTTGGGGACCTGAAGCTCAAGGTGACTTTACA-CGTTG 121970 Query 180290 GTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGG 180349 ||| ||| | || || | |||| ||| || || || || ||||| || | ||||||| Sbjct 121971 GTGTCAATTAGGTGGTTTATGGACTTTTGTAGCACTGCATGGTGCTTTTGGTTTAATTGG 122030 Query 180350 ATTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTA----TCCGTCCTTACAATG 180405 |||||| |||| || |||||| | |||||| | ||| | ||||| || || | Sbjct 122031 TTTTATGTTACGTCAATTTGAAATTGCACGT----TCAGTAAACTTACGTCCATATAACG 122086 Query 180406 CTATTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGG 180465 | ||||| ||||||| || || ||||||||||| |||||| | || ||||| | | Sbjct 122087 CAATTGCTTTCTCTGCACCAATTGCTGTATTTGTTTCTGTATTTTTAATTTACCCTTTAG 122146 Query 180466 GTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTAC 180525 |||| || |||||||||| || || |||||| || || || || || | || | | Sbjct 122147 GTCAATCTGGTTGGTTCTTCGCCCCTAGTTTTGGTGTTGCCGCTATTTTCCGTTTTAT-C 122205 Query 180526 TCTTTCTT-CAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCT 180584 | ||||| || ||||||||||||||||| || ||||| ||||| ||||||||||||||| Sbjct 122206 TTATTCTTCCAAGGTTTCCACAACTGGACACTTAACCCATTCCACATGATGGGAGTTGCT 122265 Query 180585 GGTATACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACACTG 180644 ||| | |||||| || | ||| || || ||||| | || || || || || || Sbjct 122266 GGTGTTTTAGGTGCGGCTCTATTATGTGCTATTCATGGTGCTACAGTAGAAAATACTCTT 122325 Query 180645 TATGAAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAA 180704 | |||||||| || || ||||| || |||||| | | ||||||| || ||| Sbjct 122326 TTCGAAGATGGTGATGGTGCTAACACATTCCGTGCATTTAACCCTACGCAAGCTGAAGAA 122385 Query 180705 ACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCT 180764 |||||||||||||| || || || | |||||||| || || || ||| | || ||||| Sbjct 122386 ACTTACTCTATGGTAACAGCTAATAGATTCTGGTCACAAATTTTTGGTGTAGCTTTTTCA 122445 Query 180765 AACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCC 180824 ||||| || ||| | || || || ||||| ||||| ||||| | ||||| |||| || Sbjct 122446 AACAAACGTTGGTTACACTTCTTTATGTTATTTGTTCCTGTGACAGGTCTTTGGATGTCT 122505 Query 180825 TCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAG 180884 ||||||| || | ||| | ||||| ||| | ||||||||||| ||||| |||||| Sbjct 122506 GCTATTGGTGTTGTAGGTTTAGCTCTTAACTTACGTGCTTACGACTTCGTTTCACAAGAG 122565 Query 180885 ATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAAT 180944 || | || || |||||||| || || || || |||||||| || ||| | || | ||| Sbjct 122566 ATTCGTGCTGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAAACCTTCTTCTTAAT 122625 Query 180945 GAAGGACTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAAAACTTCATCTTCCCT 181004 ||||| | ||||| ||| |||| | || || ||||||||| ||| | ||||| Sbjct 122626 GAAGGTATCCGTGCTTGGATGGCTGCACAAGACCAGCCACACGAACGCTTAGTATTCCCA 122685 Query 181005 GAAGAAGTTCTACCAAGAGGTAACGC 181030 |||||||| |||| | |||||||| Sbjct 122686 GAAGAAGTATTACCTCGTGGTAACGC 122711 >seq6719 Length=93840 Score = 82.4 bits (90), Expect = 9e-11 Identities = 61/70 (87%), Gaps = 1/70 (1%) Strand=Plus/Minus Query 153256 ATGGCGGAATTGGTAGACGCGCCAGGTTTAGGTTCTGGTGTCTTTATGACGTGGAGGTTC 153315 ||||||||||||||||||||| ||||||||||||| ||| ||||| |||| |||||| Sbjct 38479 ATGGCGGAATTGGTAGACGCGTTAGGTTTAGGTTCTAGTGAATTTAT-TCGTGCAGGTTC 38421 Query 153316 AAGTCCTCTT 153325 ||||||| || Sbjct 38420 AAGTCCTGTT 38411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610278332313600