Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq6716 102 3e-16 seq2517 93.3 1e-13 seq1025 84.2 7e-11 >seq6716 Length=19574 Score = 102 bits (112), Expect = 3e-16 Identities = 129/176 (73%), Gaps = 1/176 (1%) Strand=Plus/Minus Query 443697 AGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGC 443756 ||||||| |||||| || || || | || | ||||| || | || || ||||||||| Sbjct 10695 AGCTTCGCCGAGCGGCTGGTGGCCTACGCCGCAGTCGAGGGCATCTTCTTCAGCGGCAGC 10636 Query 443757 TTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAA 443816 || | | ||||||| ||| | || ||||| || || |||| || || |||||| || Sbjct 10635 TTCTG-CGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTTTCCAA 10577 Query 443817 CGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACA 443872 ||| || ||||| || |||||||| |||| |||||| | ||| || ||||||| Sbjct 10576 CGAGCTCATCAGCCGTGACGAGGGCCTGCACACCGACTTTGGCTGCCTGCTCTACA 10521 Score = 93.3 bits (102), Expect = 1e-13 Identities = 131/182 (72%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 443693 TCTCAG--CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGC 443750 |||||| ||||| |||||| || || || | | | || || || | | |||||| Sbjct 5523 TCTCAGTGCTTCGCCGAGCGGCTTGTGGCCTACACGGCTGTGGAGGGCATCCTCTTTAGC 5464 Query 443751 GGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTT 443810 |||||||| || ||||||||||| | || ||||| || || |||| || || ||||| Sbjct 5463 GGCAGCTTCTGCG-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTT 5405 Query 443811 TAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTA 443870 ||||| || ||||| || |||||||| |||| |||||| | ||| || ||||| Sbjct 5404 CTCCAACGAGCTCATCAGCCGTGACGAGGGCCTGCACACCGACTTTGGCTGCCTGCTCTA 5345 Query 443871 CA 443872 || Sbjct 5344 CA 5343 >seq2517 Length=9782 Score = 93.3 bits (102), Expect = 1e-13 Identities = 121/166 (73%), Gaps = 1/166 (1%) Strand=Plus/Plus Query 443706 GAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTC 443765 ||||| || || || | || | |||||| || | || || ||||||||||| || | Sbjct 4481 GAGCGCCTTGTGGCCTACGCCGCGGTCGAGGGCATCTTCTTCAGCGGCAGCTTCTGCG-C 4539 Query 443766 CATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGAT 443825 |||||||||| | || ||||| || || |||| || || ||||| ||||| || || Sbjct 4540 CATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCAT 4599 Query 443826 CAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTAC 443871 ||| || |||||||| |||| |||||| | ||| || |||||| Sbjct 4600 CAGCCGCGACGAGGGCCTGCACACCGACTTTGGCTGCCTGCTCTAC 4645 >seq1025 Length=17526 Score = 84.2 bits (92), Expect = 7e-11 Identities = 96/128 (75%), Gaps = 1/128 (1%) Strand=Plus/Minus Query 443745 TTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCT 443804 || ||||||||||| || |||| || ||| | || |||||||| || |||| || || Sbjct 16531 TTCAGCGGCAGCTTCTGCG-CCATATTTTGGATCAAGAAGCGTGGCCTCATGCCAGGGCT 16473 Query 443805 GACCTTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCT 443864 || || || ||||| || ||||| ||||||||||| |||| ||||| ||||| || Sbjct 16472 CACGTTCAGCAACGAGCTCATCAGCCGGGACGAGGGGCTGCACACAGACTTTGCCTGCCT 16413 Query 443865 TCTCTACA 443872 || |||| Sbjct 16412 CCTGTACA 16405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588199244270400