Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq664 105 8e-18 seq6716 87.8 2e-12 seq1025 84.2 3e-11 >seq664 Length=23666 Score = 105 bits (116), Expect = 8e-18 Identities = 205/300 (68%), Gaps = 2/300 (1%) Strand=Plus/Minus Query 14129 ACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTT 14188 |||| || |||||| | | ||||||||||||||||| |||| || || ||||| || Sbjct 6681 ACAATGACGCCCGTGTTGCCCTCAAAGCCATCCATCTCTGTCAGCAGCTGGTTGATCGTC 6622 Query 14189 TGTTCGCGTTCATCATTCGCAGGCATACCACCCGCA-CTGCGTTGCTTACCGACGGCGTC 14247 || ||||| || || || || | || | |||| | ||| || || ||||| || Sbjct 6621 TGCTCGCGCTCGTCGTT-GCCGCCACCCATGCCGCTGCCGCGCTGGCGGCCCACGGCATC 6563 Query 14248 AATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCG 14307 || || |||||||| | ||| || ||| || | ||| ||||| | || || Sbjct 6562 GATCTCGTCGATGAAGATGATGCAGGGTGCCTTGGCCTTGGCCTTCTCAAACAGGTCGCG 6503 Query 14308 CACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGAT 14367 ||| | |||| || || || ||||||| ||||||||| | | ||||| || || Sbjct 6502 CACGCGGCTGGCGCCCACGCCGACAAACAGCTCCACAAACTCAGAGGCGGCGCAGGAGAA 6443 Query 14368 GAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 ||||||| | || ||||| || | ||| ||| ||||||||||| || || || || Sbjct 6442 GAAGGGGGTGCCAGCCTCACCAGCCACGGCCTTGGCCAGGAGGGTCTTGCCGGTACCAGG 6383 >seq6716 Length=19574 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| || |||||||||||| |||||| || || |||||| || || |||||||| || Sbjct 5368 GTGCAGGCCCTCGTCACGGCTGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCC 5427 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| || || || || ||| |||| ||| ||||||||| Sbjct 5428 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGCTAAAGAGGATGCCCTCCACAGC 5487 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAG 130174 || | | || | || ||||| || ||| Sbjct 5488 CGTGTAGGCCACAAGCCGCTCGGCGAAG 5515 >seq1025 Length=17526 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| || |||||||| ||| |||||| || || ||| || || Sbjct 16418 GGCAAAGTCTGTGTGCAGCCCCTCGTCCCGGCTGATGAGCTCGTTGCTGAACGTGAGCCC 16477 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||||||| || |||||||| | ||| || || || || || ||| |||| ||| Sbjct 16478 TGGCATGAGGCCACGCTTCTTGATCCAAAATATGGCGCAGAAGCTGCCGCTGAAGTGGAT 16537 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG 130175 ||||| || ||||| ||||| | || |||| ||||||| Sbjct 16538 GCCCTCGACGCACGCAAACGCCAGCAGCCGCTGCGCAAAGG 16578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618383251443200