Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1025 109 6e-19 seq664 109 6e-19 seq6716 104 3e-17 seq2517 98.7 1e-15 >seq1025 Length=17526 Score = 109 bits (120), Expect = 6e-19 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 ||||||| |||| || | || |||||||| || ||||| ||| |||| || || Sbjct 16578 CCTTTGCGCAGCGGCTGCTGGCGTTTGCGTGCGTCGAGGGCATCCACTTCAGCGGCAGCT 16519 Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 ||||||| || | |||| |||||||||| || ||||||||||| ||| ||| ||||| Sbjct 16518 TCTGCGCCATATTTTGGATCAAGAAGCGTGGCCTCATGCCAGGGCTCACGTTCAGCAACG 16459 Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||| ||| || |||||||| || ||| ||| ||||| Sbjct 16458 AGCTCATCAGCCGGGACGAGGGGCTGCACACAGACTTTGC 16419 >seq664 Length=23666 Score = 109 bits (120), Expect = 6e-19 Identities = 193/279 (69%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 9611 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9670 ||||| |||||||||||||||| || ||||| || || || || || || || || || Sbjct 6660 TCAAAGCCATCCATCTCTGTCAGCAGCTGGTTGATCGTCTGCTCGCGCTCGTCGTT-GCC 6602 Query 9671 GGCATACCACCAGCA-CTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 9729 | || | | || | ||| || ||||||||||| ||||| || ||||||| ||| Sbjct 6601 GCCACCCATGCCGCTGCCGCGCTGGCGGCCCACGGCATCGATCTCGTCGATGAAGATGAT 6542 Query 9730 GCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 9789 ||| ||| || | || ||||| || || || || || |||||||||| || Sbjct 6541 GCAGGGTGCCTTGGCCTTGGCCTTCTCAAACAGGTCGCGCACGCGGCTGGCGCCCACGCC 6482 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9849 ||||||| ||||||||| | | ||||| || || ||||||| || ||||| Sbjct 6481 GACAAACAGCTCCACAAACTCAGAGGCGGCGCAGGAGAAGAAGGGGGTGCCAGCCTCACC 6422 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || | ||| ||| || || ||||| || ||||| || Sbjct 6421 AGCCACGGCCTTGGCCAGGAGGGTCTTGCCGGTACCAGG 6383 >seq6716 Length=19574 Score = 104 bits (114), Expect = 3e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||| ||||||||| || ||||||||| || | ||||||||||||||| || Sbjct 10662 GTCGAGGGCATCTTCTTCAGCGGCAGCTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGC 10603 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 |||||||| || ||| ||| ||||||||||| ||| ||||||||||| || ||| Sbjct 10602 CTCATGCCGGGCCTCACCTTTTCCAACGAGCTCATCAGCCGTGACGAGGGCCTGCAC 10546 Score = 96.9 bits (106), Expect = 4e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 94827 TGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGG 94886 ||| ||||| ||| |||| || ||||||||| || | |||||||||||||| || Sbjct 5485 TGTGGAGGGCATCCTCTTTAGCGGCAGCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGG 5426 Query 94887 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 |||||||| || ||| ||||||||||||||| ||| ||||||||||| || ||| Sbjct 5425 CCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCAGCCGTGACGAGGGCCTGCAC 5368 >seq2517 Length=9782 Score = 98.7 bits (108), Expect = 1e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||| ||||||||| || ||||||||| || | |||||||||||||| || Sbjct 4505 GTCGAGGGCATCTTCTTCAGCGGCAGCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGC 4564 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 |||||||| || ||| ||||||||||||||| ||| || |||||||| || ||| Sbjct 4565 CTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCAGCCGCGACGAGGGCCTGCAC 4621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583211806092800