Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3912 127 2e-24 seq2517 105 7e-18 seq6716 102 9e-17 seq1025 93.3 5e-14 seq2535 91.5 2e-13 >seq3912 Length=5383 Score = 127 bits (140), Expect = 2e-24 Identities = 127/165 (77%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 79383 CATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTC 79442 |||||||||||| |||||| ||||| || ||||| || ||| |||||| | Sbjct 944 CATGAAGAGGTCGTTGATCCAGAGGGCGTAAAACAGGTCACGCGCGCGCGCCTCCTCCTT 1003 Query 79443 GCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATA 79502 || |||||| |||||||||| ||||| | | ||| |||||||| |||||||| || Sbjct 1004 CCCGTGGTTCTTGCGCAGCTCGATGAAGTCAAACACGTCCGCGTGCCAGGGCTCCAGGTA 1063 Query 79503 GATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTA 79547 ||| || |||| ||||||||||||||||||||||||| ||||| Sbjct 1064 GATCGCAAACGCGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTA 1108 Score = 125 bits (138), Expect = 8e-24 Identities = 129/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 19453 CAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCC 19512 ||| ||||| ||||||| |||||||| ||||||||| |||| || |||||||| ||||| Sbjct 1112 CAGCTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCGCGTTTGCGATCTACCTGGAGCC 1053 Query 19513 ATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGAT 19572 |||||||||||||| | || ||| |||| |||||| |||||| || | |||||| Sbjct 1052 CTGGCACGCGGACGTGTTTGACTTCATCGAGCTGCGCAAGAACCACGGGAAGGAGGAGGC 993 Query 19573 GCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATG 19621 |||| || ||||| || ||| | ||||| ||||| |||||| Sbjct 992 GCGCGCGCGTGACCTGTTTTACGCCCTCTGGATCAACGACCTCTTCATG 944 Score = 102 bits (112), Expect = 9e-17 Identities = 129/178 (72%), Gaps = 12/178 (7%) Strand=Plus/Plus Query 79547 ACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCG 79606 |||| || |||| |||||| || || ||||||||||||||||||| || | ||||| | Sbjct 1345 ACCGCGCGGTGTCGTTGAACACGCGCAGCATGGGCACGATGCCGTTGGAGGTTCCGTTGG 1404 Query 79607 TCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGGATT------CCGATGC 79660 | ||| ||| | || | || || ||||| |||||| ||||||| Sbjct 1405 TGCCGCGGATGTAGGAGCCCGTGGCGCGGATGTT------GTGGATCGACACGCCGATGC 1458 Query 79661 CCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGAT 79718 | |||| | |||||||||| ||||||||||| || || ||||||||||||||||| Sbjct 1459 CGCCGGCGCTCTTGGAGATGACGGCGCACTCCTTCAGGGTGTCGTAGATGCCCTCGAT 1516 >seq2517 Length=9782 Score = 105 bits (116), Expect = 7e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 || || || ||||||||| ||| ||||| || || ||||||||||| ||||| ||| Sbjct 4505 GTCGAGGGCATCTTCTTCAGCGGCAGCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGC 4564 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 |||||||||||||| | |||||||||||||| || ||| ||||||||||| || Sbjct 4565 CTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCAGCCGCGACGAGGGCCTGCA 4620 >seq6716 Length=19574 Score = 102 bits (112), Expect = 9e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 ||||| || ||| |||| ||| ||||| || || ||||||||||| ||||| ||| Sbjct 5484 GTGGAGGGCATCCTCTTTAGCGGCAGCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGC 5425 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 |||||||||||||| | |||||||||||||| || ||| ||||||||||| || Sbjct 5424 CTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCAGCCGTGACGAGGGCCTGCA 5369 Score = 96.9 bits (106), Expect = 4e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 || || || ||||||||| ||| ||||| || || || |||||||| ||||| ||| Sbjct 10662 GTCGAGGGCATCTTCTTCAGCGGCAGCTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGC 10603 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 |||||||||||||| | || ||||||||||| || ||| ||||||||||| || Sbjct 10602 CTCATGCCGGGCCTCACCTTTTCCAACGAGCTCATCAGCCGTGACGAGGGCCTGCA 10547 >seq1025 Length=17526 Score = 93.3 bits (102), Expect = 5e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 ||||| || || || | || ||||| ||||| || || ||| |||| ||| ||| Sbjct 16576 TTTGCGCAGCGGCTGCTGGCGTTTGCGTGCGTCGAGGGCATCCACTTCAGCGGCAGCTTC 16517 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 || || || || ||| |||| ||||||||||||||||| || || | ||| ||||||| Sbjct 16516 TGCGCCATATTTTGGATCAAGAAGCGTGGCCTCATGCCAGGGCTCACGTTCAGCAACGAG 16457 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCA 60118 || || |||||||||||| || || Sbjct 16456 CTCATCAGCCGGGACGAGGGGCTGCA 16431 >seq2535 Length=8865 Score = 91.5 bits (100), Expect = 2e-13 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 59572 GGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGG 59631 ||||||| || |||||| |||| ||| | ||| ||| |||||| ||||||| | Sbjct 1610 GGTACCCCGAGGTGTGGGAGATGTACAAGCAGGCGCTCGCCAGCTTCTGGACCGTCGACG 1551 Query 59632 AGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATT 59691 || | ||||| | || ||| | | ||| |||| |||||| | | | ||||||| | Sbjct 1550 AGGTCGACCTGGGGGGCGACTTCAGGGACTGGGCCAAGCTGACGGAGGGGGAGCAGCGGT 1491 Query 59692 TCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAA 59746 | ||||| || |||||||||||||| || |||||| |||||| |||| || Sbjct 1490 TTGTCAAGTACGTGCTGGCCTTCTTCGCCGCCTCTGATGGCATTGTGCTGGAGAA 1436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548478723916800