Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3912 109 6e-19 seq6716 87.8 2e-12 seq2535 87.8 2e-12 seq2517 87.8 2e-12 seq1025 87.8 2e-12 >seq3912 Length=5383 Score = 109 bits (120), Expect = 6e-19 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 53534 TACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGG 53593 ||||| ||||||| || || ||||||||||| |||| || |||||||| ||||| ||| Sbjct 1108 TACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCGCGTTTGCGATCTACCTGGAGCCCTGG 1049 Query 53594 CACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGC 53653 ||||| ||| | | || || |||||||||| ||| || || | || ||| |||| Sbjct 1048 CACGCGGACGTGTTTGACTTCATCGAGCTGCGCAAGAACCACGGGAAGGAGGAGGCGCGC 989 Query 53654 TGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATG 53698 |||||||||||| || || ||||| |||||||||||| Sbjct 988 GCGCGTGACCTGTTTTACGCCCTCTGGATCAACGACCTCTTCATG 944 Score = 84.2 bits (92), Expect = 2e-11 Identities = 125/174 (72%), Gaps = 4/174 (2%) Strand=Plus/Minus Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 ||||| ||||||||||| || || |||||||| ||| |||||||||| | | || || Sbjct 1516 ATCGAGGGCATCTACGACACCCTGAAGGAGTGCGCCGTCATCTCCAAGAGCGCCGGCGGC 1457 Query 53423 ATCG--GTATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACG 53480 |||| || || | | | | ||| |||| || | ||| | ||| || || |||| Sbjct 1456 ATCGGCGTGTCGA-TCCAC-AACATCCGCGCCACGGGCTCCTACATCCGCGGCACCAACG 1399 Query 53481 GCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGT 53534 | | || | || |||||||| ||||| ||||| |||||| |||| || |||| Sbjct 1398 GAACCTCCAACGGCATCGTGCCCATGCTGCGCGTGTTCAACGACACCGCGCGGT 1345 >seq6716 Length=19574 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 ||| || || | ||| || | || || ||||| | ||||| ||||| || || ||||| Sbjct 10552 GCCCTCGTCACGGCTGATGAGCTCGTTGGAAAAGGTGAGGCCCGGCATGAGGCCGCGCTT 10611 Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGAC 74878 ||| | |||||||||||| |||||| || |||||||||||||| ||||| Sbjct 10612 CTTGAGCCAAAAGATGGCGCAGAAGCTGCCGCTGAAGAAGATGCCCTCGAC 10662 >seq2535 Length=8865 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 75135 TTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGG 75194 ||||||| || ||||| || ||||||||||| || ||||| || |||| ||| | Sbjct 1436 TTCTCCAGCACAATGCCATCAGAGGCGGCGAAGAAGGCCAGCACGTACTTGACAAACCGC 1495 Query 75195 CGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCG 75254 |||| | || || || ||| |||| ||| | | ||| ||| ||| || | ||| ||| Sbjct 1496 TGCTCCCCCTCCGTCAGCTTGGCCCAGTCCCTGAAGTCGCCCCCCAGGTCGACCTCGTCG 1555 Query 75255 ACCGTCCAGAAACTCCCAATCGCCTTTTTGTACAAAGACCACAAGTCAGGGTA 75307 || |||||||| || | | ||||| ||||||| ||||| || ||||| Sbjct 1556 ACGGTCCAGAAGCTGGCGAGCGCCTGCTTGTACATCTCCCACACCTCGGGGTA 1608 >seq2517 Length=9782 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 ||| || || | ||| || | || || || || | ||||| ||||| || || ||||| Sbjct 4615 GCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCGCGCTT 4556 Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887 ||| | ||| |||||||| |||||| || |||||||||||||| ||||| || | Sbjct 4555 CTTGAGCCAGAAGATGGCGCAGAAGCTGCCGCTGAAGAAGATGCCCTCGACCGCGGCGTA 4496 Query 74888 GGCGACAAGGCGTTGCGCGAA 74908 ||| |||||||| | || ||| Sbjct 4495 GGCCACAAGGCGCTCCGAGAA 4475 >seq1025 Length=17526 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 74799 AACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCA 74858 |||| || || ||||| || ||||||||||| | |||||| ||||| |||||| || Sbjct 16467 AACGTGAGCCCTGGCATGAGGCCACGCTTCTTGATCCAAAATATGGCGCAGAAGCTGCCG 16526 Query 74859 CTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGC 74914 |||||| |||||| ||||| |||||||| || | || || ||||| || || || Sbjct 16527 CTGAAGTGGATGCCCTCGACGCACGCAAACGCCAGCAGCCGCTGCGCAAAGGGCGC 16582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547170033856000