Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq6720 663 0.0 >seq6720 Length=135362 Score = 663 bits (734), Expect = 0.0 Identities = 747/997 (75%), Gaps = 10/997 (1%) Strand=Plus/Minus Query 176113 TTTTGCCAGTGGGTCACCAATACAAACAACAGAATTTACGTTGGTTGGTTTGGTGTGCTC 176172 ||||| ||||| |||| || | ||| | | ||| | |||||||| |||||| | Sbjct 37394 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 37335 Query 176173 ATGATTCCATGTCTGCTCACTGCTGCAGCATGTTTT-ATCGTTGCATTTATTGCAGCACC 176231 ||||| || || | | || ||| || | ||| || || | | || || ||||| || Sbjct 37334 ATGATCCCTTGCTTATTAACAGCTACATC-TGTATTCATTATCGGCTTCATCGCAGCTCC 37276 Query 176232 ACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTATGGAAACAA 176291 || || |||||||| ||||| || || ||||| | || ||| || | || || ||||| Sbjct 37275 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAA 37216 Query 176292 CATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTCTACCCAAT 176351 ||||||||| || || | |||| | || ||||||||||| || |||||||||||||| Sbjct 37215 CATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAAT 37156 Query 176352 CTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTTGT 176411 |||||||| || | | ||||| ||| | ||||| || || || |||||| | | || Sbjct 37155 TTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 37096 Query 176412 ATTCCACTTCCTTATCGGTATCTCAGCTTACATGGGACGCCAATGGGAACTTAGTTACAG 176471 | ||||||| | | ||| | || |||||||||| || | ||||||||| |||| | Sbjct 37095 TTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 37036 Query 176472 ACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCGATGGC 176531 |||| ||||||||||||||||||||||| ||||| || |||||| |||| || | || Sbjct 37035 TTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGC 36976 Query 176532 AGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCAT 176591 ||| ||| | |||| ||| |||| ||||| ||||||||||||||||||||| | || || Sbjct 36975 AGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 36916 Query 176592 TTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCC 176651 || ||||| |||||||| ||| | ||||||||||| |||||||||||| |||||||||| Sbjct 36915 CTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCC 36856 Query 176652 ATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCACGG 176711 |||||| ||| | || || || ||||| |||||||| || | |||||||| |||||||| Sbjct 36855 ATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGG 36796 Query 176712 AAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAAAACTACGG 176771 | || ||||| ||| | | | || || || ||||||||||| ||| | || Sbjct 36795 TTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGG 36736 Query 176772 TTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTGG 176831 ||||||||| || |||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 36735 TTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGG 36676 Query 176832 TCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGC 176891 |||| | |||||||| || || || ||||| ||||| | | ||||||||| | || Sbjct 36675 TCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGC 36616 Query 176892 AGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAA 176951 || | || || | ||||| ||||| ||||| | ||| | | || ||||||||||| Sbjct 36615 TGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCAA 36556 Query 176952 CCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAG----ACAACTCTGGTAAAGTGATTC 177007 | | ||||| |||||||||||||| || || | | |||| ||| || | Sbjct 36555 CTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAA----GGTCGTGTATTAA 36500 Query 177008 CTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTA 177067 || |||| || ||| | |||||||| ||| | ||||||||||| |||||||| |||| Sbjct 36499 ACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTA 36440 Query 177068 ATGCTCACAACTTCCCACTTGACCTTGCTGCTGCAGA 177104 | ||||||||||||||| | ||| | ||| ||| ||| Sbjct 36439 ACGCTCACAACTTCCCATTAGACTTAGCTTCTGTAGA 36403 Score = 663 bits (734), Expect = 0.0 Identities = 747/997 (75%), Gaps = 10/997 (1%) Strand=Plus/Plus Query 176113 TTTTGCCAGTGGGTCACCAATACAAACAACAGAATTTACGTTGGTTGGTTTGGTGTGCTC 176172 ||||| ||||| |||| || | ||| | | ||| | |||||||| |||||| | Sbjct 108254 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 108313 Query 176173 ATGATTCCATGTCTGCTCACTGCTGCAGCATGTTTT-ATCGTTGCATTTATTGCAGCACC 176231 ||||| || || | | || ||| || | ||| || || | | || || ||||| || Sbjct 108314 ATGATCCCTTGCTTATTAACAGCTACATC-TGTATTCATTATCGGCTTCATCGCAGCTCC 108372 Query 176232 ACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTATGGAAACAA 176291 || || |||||||| ||||| || || ||||| | || ||| || | || || ||||| Sbjct 108373 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAA 108432 Query 176292 CATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTCTACCCAAT 176351 ||||||||| || || | |||| | || ||||||||||| || |||||||||||||| Sbjct 108433 CATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAAT 108492 Query 176352 CTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTTGT 176411 |||||||| || | | ||||| ||| | ||||| || || || |||||| | | || Sbjct 108493 TTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 108552 Query 176412 ATTCCACTTCCTTATCGGTATCTCAGCTTACATGGGACGCCAATGGGAACTTAGTTACAG 176471 | ||||||| | | ||| | || |||||||||| || | ||||||||| |||| | Sbjct 108553 TTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 108612 Query 176472 ACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCGATGGC 176531 |||| ||||||||||||||||||||||| ||||| || |||||| |||| || | || Sbjct 108613 TTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGC 108672 Query 176532 AGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCAT 176591 ||| ||| | |||| ||| |||| ||||| ||||||||||||||||||||| | || || Sbjct 108673 AGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 108732 Query 176592 TTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCC 176651 || ||||| |||||||| ||| | ||||||||||| |||||||||||| |||||||||| Sbjct 108733 CTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCC 108792 Query 176652 ATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCACGG 176711 |||||| ||| | || || || ||||| |||||||| || | |||||||| |||||||| Sbjct 108793 ATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGG 108852 Query 176712 AAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAAAACTACGG 176771 | || ||||| ||| | | | || || || ||||||||||| ||| | || Sbjct 108853 TTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGG 108912 Query 176772 TTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTGG 176831 ||||||||| || |||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 108913 TTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGG 108972 Query 176832 TCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGC 176891 |||| | |||||||| || || || ||||| ||||| | | ||||||||| | || Sbjct 108973 TCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGC 109032 Query 176892 AGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAA 176951 || | || || | ||||| ||||| ||||| | ||| | | || ||||||||||| Sbjct 109033 TGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCAA 109092 Query 176952 CCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAG----ACAACTCTGGTAAAGTGATTC 177007 | | ||||| |||||||||||||| || || | | |||| ||| || | Sbjct 109093 CTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAA----GGTCGTGTATTAA 109148 Query 177008 CTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTA 177067 || |||| || ||| | |||||||| ||| | ||||||||||| |||||||| |||| Sbjct 109149 ACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTA 109208 Query 177068 ATGCTCACAACTTCCCACTTGACCTTGCTGCTGCAGA 177104 | ||||||||||||||| | ||| | ||| ||| ||| Sbjct 109209 ACGCTCACAACTTCCCATTAGACTTAGCTTCTGTAGA 109245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603443706470400