Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1067 104 5e-17 seq2272 98.7 2e-15 seq2396 89.7 1e-12 seq1439 86.0 1e-11 >seq1067 Length=17102 Score = 104 bits (114), Expect = 5e-17 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| ||||| || ||||| | || || Sbjct 10198 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCCAGGGTGCGGCCGTCC 10139 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAANNCCT 211013 |||||||||||||| |||||||| ||||| || ||||| ||||| | ||| Sbjct 10138 TCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCT 10088 Score = 98.7 bits (108), Expect = 2e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || || ||||| | || || Sbjct 10727 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCC 10668 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAANNCCT 211013 |||||||||||||| |||||||| ||||| || ||||| ||||| | ||| Sbjct 10667 TCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCT 10617 Score = 98.7 bits (108), Expect = 2e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || || ||||| | ||||| Sbjct 11201 AGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCC 11142 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAANNCCT 211013 |||||||||||||| |||||||| ||||| || ||||| || || | ||| Sbjct 11141 TCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCT 11091 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || || ||||| || || || || || | ||||| Sbjct 11656 AGCACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCCAGAGTGCGGCCATCC 11597 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAANNCCT 211013 |||||||||||||| |||||||| ||||| || ||||| ||||| | ||| Sbjct 11596 TCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCT 11546 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || ||||| || || || || ||||| | || || Sbjct 12193 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGCCAGGGTGCGGCCGTCC 12134 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAANNCCT 211013 |||||||||||||| |||||||| ||||| || ||||| ||||| | ||| Sbjct 12133 TCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCT 12083 >seq2272 Length=9786 Score = 98.7 bits (108), Expect = 2e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| ||||| || ||||| | || || Sbjct 5768 AGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCCAGGGTGCGGCCGTCC 5827 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAANNCCT 211013 |||||||||||||| || ||||| ||||| || ||||| || |||| ||| Sbjct 5828 TCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCT 5878 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || || ||||| | || || Sbjct 4759 AGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCGTCC 4818 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAANNCCT 211013 |||||||||||||| || ||||| ||||| || ||||| ||||| | ||| Sbjct 4819 TCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCT 4869 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || |||||||| || |||||||| || || || ||||| | || || Sbjct 6267 AGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCC 6326 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAANNCCT 211013 ||||||||||||||||| ||||| ||||| || ||||| ||||| | ||| Sbjct 6327 TCCAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCT 6377 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || || ||||| || || || ||||| | ||||| Sbjct 5258 AGCACCAAGTGCAGCGTTGACTCCTTCTGAATGTTGTAGTCAGCCAGGGTGCGGCCATCC 5317 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAANNCCT 211013 |||||||||||||| |||||||| ||||| || ||||| || || | ||| Sbjct 5318 TCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATCCCT 5368 >seq2396 Length=9575 Score = 89.7 bits (98), Expect = 1e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || || || ||||| | || || Sbjct 56 AGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCC 115 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAANNCCT 211013 |||||||||||||| |||||||| || || || ||||| ||||| | ||| Sbjct 116 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGGATGCCT 166 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || || |||||||||||||| |||||||| ||||||||||| | || ||||| Sbjct 908 CCCTCTTTGTCCTGGATCTTGGACTTCACGTTCTCGATGGTGTCGCTGGACTCCACCTCA 967 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| |||||||| ||||| ||||| | |||||| Sbjct 968 AGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 1011 Score = 86.0 bits (94), Expect = 1e-11 Identities = 84/107 (79%), Gaps = 6/107 (6%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTC---AGAGCTTTCAACC 211067 || ||||||||||||||||| || ||||| ||||||||||| ||| || ||| Sbjct 450 CCCTCCTTGTCCTGGATCTTGGACTTGACGTTCTCGATGGTGTCGCTAGA---CTCCACC 506 Query 211068 TCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| |||||||| ||||| ||||| | |||||| Sbjct 507 TCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 553 >seq1439 Length=14137 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || || || ||||| | || || Sbjct 2993 AGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCC 2934 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAANNCCT 211013 |||||||||||||| || ||||| ||||| || ||||| || || | ||| Sbjct 2933 TCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCT 2883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159052197012800