Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq6720 100 7e-16 seq1067 93.3 1e-13 seq2272 86.0 1e-11 >seq6720 Length=135362 Score = 100 bits (110), Expect = 7e-16 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||| |||||||| || ||||| || || ||||| || ||||| ||||| Sbjct 97975 GAAAATTTGACCATCTGTAATAGAAATTACATTAGTTGGAATATATGCCGAAACGTCACC 97916 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGT 4559 | |||||||||| |||| |||||| ||||| Sbjct 97915 TTCTTGTGTTTCTACAATAGGTAAAGCTGT 97886 Score = 95.1 bits (104), Expect = 3e-14 Identities = 98/127 (77%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| ||||| ||| |||||||||||||| |||||||||| | | | Sbjct 39187 TGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATAATCCACCGCTTGTGCGGGCCC 39128 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGC 7854 |||||| || |||||||||| | |||||| | || | | |||| || | | || |||| Sbjct 39127 CCGTCAATTCCTTTGAGTTTCACTCTTGCGAGCATACTTCCCAGGCGGGACACTTAACGC 39068 Query 7855 GTTAGCT 7861 ||||||| Sbjct 39067 GTTAGCT 39061 Score = 95.1 bits (104), Expect = 3e-14 Identities = 98/127 (77%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| ||||| ||| |||||||||||||| |||||||||| | | | Sbjct 106461 TGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATAATCCACCGCTTGTGCGGGCCC 106520 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGC 7854 |||||| || |||||||||| | |||||| | || | | |||| || | | || |||| Sbjct 106521 CCGTCAATTCCTTTGAGTTTCACTCTTGCGAGCATACTTCCCAGGCGGGACACTTAACGC 106580 Query 7855 GTTAGCT 7861 ||||||| Sbjct 106581 GTTAGCT 106587 >seq1067 Length=17102 Score = 93.3 bits (102), Expect = 1e-13 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || |||||||| ||||| || || |||| ||||||||||||| || Sbjct 10208 ACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCCAGGGT 10149 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||||||||| || || || ||||| || || || || Sbjct 10148 GCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGAGGGATGCC 10089 Query 225612 T 225612 | Sbjct 10088 T 10088 Score = 91.5 bits (100), Expect = 4e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || |||||||| ||||| || || |||| ||||| ||||||| || Sbjct 11210 CGCAGGCGCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTG 11151 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || |||||||| ||||||||||| || || || ||||| || || || ||| Sbjct 11150 CGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCT 11091 Score = 91.5 bits (100), Expect = 4e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || |||||||| ||||| || || || | ||||| ||||||| ||| Sbjct 11665 CGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCCAGAGTG 11606 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || |||||||| ||||||||||| || || || ||||| || || || ||| Sbjct 11605 CGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCT 11546 Score = 91.5 bits (100), Expect = 4e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || |||||||| ||||| || || |||| |||||| ||||||| || Sbjct 12202 CGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGCCAGGGTG 12143 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| ||||||||||| || || || ||||| || || || ||| Sbjct 12142 CGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCT 12083 Score = 86.0 bits (94), Expect = 1e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || |||||||| ||||| || || |||| ||||| ||||||| || Sbjct 10736 CGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTG 10677 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| ||||||||||| || || || ||||| || || || ||| Sbjct 10676 CGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCT 10617 >seq2272 Length=9786 Score = 86.0 bits (94), Expect = 1e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || |||||||| ||||| || || |||| ||||||||||||| || Sbjct 5759 CGCAGGCGCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCCAGGGTG 5818 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || || ||||| || || || ||||| || ||||| ||| Sbjct 5819 CGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCT 5878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192428523063680