Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq6720 84.2 3e-11 >seq6720 Length=135362 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 4034 TAGCTCAGTTGGTTAGAGCGCTCGCCTGATAAGCGGGAGGTCGGTAGTTCAAGTCTACTC 4093 ||||||||| |||||||||| ||| ||||||||| |||||||||||||||||||||| Sbjct 39957 TAGCTCAGTCGGTTAGAGCGTGCGCTTGATAAGCGCAAGGTCGGTAGTTCAAGTCTACTA 40016 Query 4094 GAGACAACCAG 4104 || | ||||| Sbjct 40017 TAGTCCACCAG 40027 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 4034 TAGCTCAGTTGGTTAGAGCGCTCGCCTGATAAGCGGGAGGTCGGTAGTTCAAGTCTACTC 4093 ||||||||| |||||||||| ||| ||||||||| |||||||||||||||||||||| Sbjct 105691 TAGCTCAGTCGGTTAGAGCGTGCGCTTGATAAGCGCAAGGTCGGTAGTTCAAGTCTACTA 105632 Query 4094 GAGACAACCAG 4104 || | ||||| Sbjct 105631 TAGTCCACCAG 105621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787937007731200