Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq6720 686 0.0 seq6719 91.5 2e-13 >seq6720 Length=135362 Score = 686 bits (760), Expect = 0.0 Identities = 786/1043 (75%), Gaps = 14/1043 (1%) Strand=Plus/Minus Query 183148 ATGACTGCAACTCTTTCACAACAACGCAATACTTCT-GCCTG-GGAATCCTTCT-GCGAA 183204 |||||||| ||||||| ||| || ||||||| |||| || || || | | || Sbjct 37442 ATGACTGCTGTTCTTTCA-AAC--CGTGGTACTTCTAGCCTTTGGGCTCGTTTTTGTGAG 37386 Query 183205 TGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACTGATGATTCCA 183264 ||||| || ||| | ||||| | || | |||||||| || | ||||| || Sbjct 37385 TGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTAATGATCCCT 37326 Query 183265 ACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTCCTCCTGTGGA 183323 | || |||| || ||||| ||||| | | |||| |||| |||||||| || || Sbjct 37325 TGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAGCTCCTCCAGTAGA 37267 Query 183324 CATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACAACATCATCTC 183383 ||||| || ||||| || || ||| |||| || | | || || |||||||||||||| Sbjct 37266 TATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAACATCATCTC 37207 Query 183384 TGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCATCTGGGAAGC 183443 |||||| || | ||| | || |||||||| || ||||||||||| || || |||||||| Sbjct 37206 TGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGC 37147 Query 183444 AGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAGTCTTCCACTT 183503 || || | || |||||| | || |||||||||||||||||| | | || | |||||| Sbjct 37146 TGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTGCCACTT 37087 Query 183504 CCTCATTGGCGT--CTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACCGTCTCGGT 183561 | | | || || | ||| ||||||||||||||||||||| | ||||||||| | ||| Sbjct 37086 CTTATTAGGTGTTGCATCT--TACATGGGTCGTGAGTGGGAACTTTCTTACCGTTTAGGT 37029 Query 183562 ATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGCTGTCTTC 183621 |||||||||||||||||||||||||| || || || ||||||||||| || || ||| Sbjct 37028 ATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGCAGTATTC 36969 Query 183622 CTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTATCAGTGGC 183681 | |||| || |||| ||||||||||| |||||||||||| | |||||| ||| Sbjct 36968 TTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGT 36909 Query 183682 ACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCAC 183741 || || |||| ||| | || |||||||| ||||||||||| | |||||||| |||||| Sbjct 36908 ACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCCATTCCAC 36849 Query 183742 ATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTG 183801 ||| | ||||| |||||||| || |||||||| | ||| || ||||||||||| | Sbjct 36848 ATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGGTTCATTA 36789 Query 183802 GTTACTTCCTCGCTGGTTCGTGAAACCACTGAGTCTGAGTCACAGAACTATGGTTACAAG 183861 || ||||| || | | |||||||| ||||| || || ||| | |||||||| Sbjct 36788 GTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGGTTACAAA 36729 Query 183862 TTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTTGGTCGTCTG 183921 || ||||||||||||||||| |||||||| || ||||| || || |||||||||||| | Sbjct 36728 TTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGGTCGTTTA 36669 Query 183922 ATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTTGCTGCTTGG 183981 |||||||| || || || || ||||| |||||||| | ||||||||| | ||||||||| Sbjct 36668 ATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGG 36609 Query 183982 CCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCA-CTATGGCATTTAACCTGAA 184040 || || || |||| ||||| |||||| | ||| ||| || |||||||||| ||| | || Sbjct 36608 CCGGTAATCTGCATTTGGTTCACTGCTTTAGGT-TTATCAACTATGGCATTCAACTTAAA 36550 Query 184041 TGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACACCTGGGC 184100 || || ||||||||||| || | ||||| ||||||||||| | ||||| ||||| Sbjct 36549 CGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACACTTGGGC 36490 Query 184101 AGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAA 184160 ||| | ||||||||||| | || |||||||| |||||||| ||||| |||||||| Sbjct 36489 TGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGCTCACAA 36430 Query 184161 CTTCCCTCTCGACCTTGCTGCTG 184183 |||||| | ||| | ||| ||| Sbjct 36429 CTTCCCATTAGACTTAGCTTCTG 36407 Score = 686 bits (760), Expect = 0.0 Identities = 786/1043 (75%), Gaps = 14/1043 (1%) Strand=Plus/Plus Query 183148 ATGACTGCAACTCTTTCACAACAACGCAATACTTCT-GCCTG-GGAATCCTTCT-GCGAA 183204 |||||||| ||||||| ||| || ||||||| |||| || || || | | || Sbjct 108206 ATGACTGCTGTTCTTTCA-AAC--CGTGGTACTTCTAGCCTTTGGGCTCGTTTTTGTGAG 108262 Query 183205 TGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACTGATGATTCCA 183264 ||||| || ||| | ||||| | || | |||||||| || | ||||| || Sbjct 108263 TGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTAATGATCCCT 108322 Query 183265 ACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTCCTCCTGTGGA 183323 | || |||| || ||||| ||||| | | |||| |||| |||||||| || || Sbjct 108323 TGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAGCTCCTCCAGTAGA 108381 Query 183324 CATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACAACATCATCTC 183383 ||||| || ||||| || || ||| |||| || | | || || |||||||||||||| Sbjct 108382 TATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAACATCATCTC 108441 Query 183384 TGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCATCTGGGAAGC 183443 |||||| || | ||| | || |||||||| || ||||||||||| || || |||||||| Sbjct 108442 TGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGC 108501 Query 183444 AGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAGTCTTCCACTT 183503 || || | || |||||| | || |||||||||||||||||| | | || | |||||| Sbjct 108502 TGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTGCCACTT 108561 Query 183504 CCTCATTGGCGT--CTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACCGTCTCGGT 183561 | | | || || | ||| ||||||||||||||||||||| | ||||||||| | ||| Sbjct 108562 CTTATTAGGTGTTGCATCT--TACATGGGTCGTGAGTGGGAACTTTCTTACCGTTTAGGT 108619 Query 183562 ATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGCTGTCTTC 183621 |||||||||||||||||||||||||| || || || ||||||||||| || || ||| Sbjct 108620 ATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGCAGTATTC 108679 Query 183622 CTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTATCAGTGGC 183681 | |||| || |||| ||||||||||| |||||||||||| | |||||| ||| Sbjct 108680 TTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGT 108739 Query 183682 ACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCAC 183741 || || |||| ||| | || |||||||| ||||||||||| | |||||||| |||||| Sbjct 108740 ACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCCATTCCAC 108799 Query 183742 ATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTG 183801 ||| | ||||| |||||||| || |||||||| | ||| || ||||||||||| | Sbjct 108800 ATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGGTTCATTA 108859 Query 183802 GTTACTTCCTCGCTGGTTCGTGAAACCACTGAGTCTGAGTCACAGAACTATGGTTACAAG 183861 || ||||| || | | |||||||| ||||| || || ||| | |||||||| Sbjct 108860 GTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGGTTACAAA 108919 Query 183862 TTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTTGGTCGTCTG 183921 || ||||||||||||||||| |||||||| || ||||| || || |||||||||||| | Sbjct 108920 TTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGGTCGTTTA 108979 Query 183922 ATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTTGCTGCTTGG 183981 |||||||| || || || || ||||| |||||||| | ||||||||| | ||||||||| Sbjct 108980 ATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGG 109039 Query 183982 CCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGC-ACTATGGCATTTAACCTGAA 184040 || || || |||| ||||| |||||| | ||| ||| | ||||||||||| ||| | || Sbjct 109040 CCGGTAATCTGCATTTGGTTCACTGCTTTAGGT-TTATCAACTATGGCATTCAACTTAAA 109098 Query 184041 TGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACACCTGGGC 184100 || || ||||||||||| || | ||||| ||||||||||| | ||||| ||||| Sbjct 109099 CGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACACTTGGGC 109158 Query 184101 AGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAA 184160 ||| | ||||||||||| | || |||||||| |||||||| ||||| |||||||| Sbjct 109159 TGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGCTCACAA 109218 Query 184161 CTTCCCTCTCGACCTTGCTGCTG 184183 |||||| | ||| | ||| ||| Sbjct 109219 CTTCCCATTAGACTTAGCTTCTG 109241 Score = 520 bits (576), Expect = 1e-142 Identities = 716/1001 (72%), Gaps = 0/1001 (0%) Strand=Plus/Plus Query 185973 GATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTTTT 186032 ||||||||| | | ||||| ||||| ||||| || ||||| || | ||| | || Sbjct 121714 GATGACTGGTTACGTCAAGACCGTTTTGTTTTTGTAGGTTGGTCAGGTCTTCTTTTATTA 121773 Query 186033 CCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCTGG 186092 || ||| ||| | ||| | ||||| ||| ||||||| ||||| |||||||| ||| Sbjct 121774 CCTTGTGCGTATTTTGCATTAGGTGGTTGGTTTACTGGGACAACATTTGTTACTTCTTGG 121833 Query 186093 TATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCAGTG 186152 || || || || || || |||||||| | || ||| ||| || | || || ||||| Sbjct 121834 TACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCAGTT 121893 Query 186153 TCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAA 186212 || ||||| || || ||||| ||||||| | | | ||||||| ||||| ||||| Sbjct 121894 TCGACTCCAGCAAACAGTATGGCTCATTCTTTATTATTTATTTGGGGACCTGAAGCTCAA 121953 Query 186213 GGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGA 186272 || || | | || |||| ||| | || || | |||| |||||| || || || || Sbjct 121954 GGTGACTTTACACGTTGGTGTCAATTAGGTGGTTTATGGACTTTTGTAGCACTGCATGGT 122013 Query 186273 GCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCGTCTCGTAGGTATC 186332 || |||| | | || ||||| ||| | || || |||||||| ||| ||| | Sbjct 122014 GCTTTTGGTTTAATTGGTTTTATGTTACGTCAATTTGAAATTGCACGTTCAGTAAACTTA 122073 Query 186333 CGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTCCTC 186392 |||||||| || || |||||||| |||| || || ||||| |||||| |||||| | Sbjct 122074 CGTCCATATAACGCAATTGCTTTCTCTGCACCAATTGCTGTATTTGTTTCTGTATTTTTA 122133 Query 186393 ATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCAATC 186452 || |||||| | || || || ||||||||||| || ||||| || || || || Sbjct 122134 ATTTACCCTTTAGGTCAATCTGGTTGGTTCTTCGCCCCTAGTTTTGGTGTTGCCGCTATT 122193 Query 186453 TTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATG 186512 || | || | || ||| ||||||| |||||||||||||| | || |||||||||||| Sbjct 122194 TTCCGTTTTATCTTATTCTTCCAAGGTTTCCACAACTGGACACTTAACCCATTCCACATG 122253 Query 186513 ATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACTGTA 186572 ||||| || || ||| | | |||| ||||| | | || || ||||||| ||| ||| Sbjct 122254 ATGGGAGTTGCTGGTGTTTTAGGTGCGGCTCTATTATGTGCTATTCATGGTGCTACAGTA 122313 Query 186573 GAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATACGACG 186632 ||||||||||||| |||||||| || || ||||||||| ||||| | | ||| Sbjct 122314 GAAAATACTCTTTTCGAAGATGGTGATGGTGCTAACACATTCCGTGCATTTAACCCTACG 122373 Query 186633 CAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTCGGA 186692 |||| |||||||| || || ||||| || || || |||||||||||||| || || || Sbjct 122374 CAAGCTGAAGAAACTTACTCTATGGTAACAGCTAATAGATTCTGGTCACAAATTTTTGGT 122433 Query 186693 ATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTATGGGT 186752 | || ||| || || |||||| | || ||||| ||| | ||||||||||| | ||| Sbjct 122434 GTAGCTTTTTCAAACAAACGTTGGTTACACTTCTTTATGTTATTTGTTCCTGTGACAGGT 122493 Query 186753 CTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGACTTT 186812 ||||||| ||| | ||||| || | ||| | ||||||||| | |||||||| ||||| Sbjct 122494 CTTTGGATGTCTGCTATTGGTGTTGTAGGTTTAGCTCTTAACTTACGTGCTTACGACTTC 122553 Query 186813 GTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGAAT 186872 || || ||| | | || || || ||||| || || || || ||||| || || || Sbjct 122554 GTTTCACAAGAGATTCGTGCTGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAAAC 122613 Query 186873 ATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATGAAAAC 186932 | || | ||||||||| | ||||| |||||||| || || || ||||| ||| | Sbjct 122614 CTTCTTCTTAATGAAGGTATCCGTGCTTGGATGGCTGCACAAGACCAGCCACACGAACGC 122673 Query 186933 TTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973 || ||||| || |||||||| || || | || |||||||| Sbjct 122674 TTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGCTCT 122714 Score = 91.5 bits (100), Expect = 2e-13 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 19655 TTAGCTCAGTTGGTAGAGCACCTGCTTTGCAAGCAGGCTGTCAGGAGTTCGAGTCTCCTA 19714 ||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||| Sbjct 40270 TTAGCTCAGTTGGTAGAGCACCTGCTTTGCACGCAGGGGGTCAGGAGTTCGACTCTCCTA 40329 Score = 91.5 bits (100), Expect = 2e-13 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 19655 TTAGCTCAGTTGGTAGAGCACCTGCTTTGCAAGCAGGCTGTCAGGAGTTCGAGTCTCCTA 19714 ||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||| Sbjct 105378 TTAGCTCAGTTGGTAGAGCACCTGCTTTGCACGCAGGGGGTCAGGAGTTCGACTCTCCTA 105319 >seq6719 Length=93840 Score = 91.5 bits (100), Expect = 2e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 19833 TGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAAGTAATTCGTGGAGGTTCAA 19892 |||||||||||||||||||| | ||||||||||| |||||| | ||||||| |||||||| Sbjct 38478 TGGCGGAATTGGTAGACGCGTTAGGTTTAGGTTCTAGTGAATTTATTCGTGCAGGTTCAA 38419 Query 19893 GTCCT 19897 ||||| Sbjct 38418 GTCCT 38414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622018146086400