Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq6720 771 0.0 >seq6720 Length=135362 Score = 771 bits (854), Expect = 0.0 Identities = 797/1038 (77%), Gaps = 4/1038 (0%) Strand=Plus/Minus Query 163880 ATGACTGCTACACTTTCACAACAACGTTCTACTAACACCTGGGAACAATTCTGTAACTGG 163939 ||||||||| |||||| | | || || ||| | |||| | || ||| | ||| Sbjct 37442 ATGACTGCTGTTCTTTCAAACCGTGGTACTTCTAGCCTTTGGGCTCGTTTTTGTGAGTGG 37383 Query 163940 GTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTGATGATTCCCTGC 163999 | |||||||| || || ||||| || ||||||||||||| || | ||||| || ||| Sbjct 37382 ATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTAATGATCCCTTGC 37323 Query 164000 CTGCTGGCAGCGACTACATGT-TTCATCATCGCCTTCATCGGTGCTCCTCCTGTGGACAT 164058 | | |||| || | ||| ||||| |||| |||||||| |||||||| || || || Sbjct 37322 TTATTAACAGCTACATC-TGTATTCATTATCGGCTTCATCGCAGCTCCTCCAGTAGATAT 37264 Query 164059 CGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGG 164118 |||||| ||||| || || || ||||||| | | || || ||||||||||||||||| Sbjct 37263 CGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAACATCATCTCTGG 37204 Query 164119 TGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGC 164178 |||| |||||||| | |||||||| |||||||| ||||||||||| || |||||||| || Sbjct 37203 TGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGC 37144 Query 164179 AAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCT 164238 | | ||||| ||| | |||||||||||||||| |||| | | || | ||||||| | Sbjct 37143 TTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTGCCACTTCTT 37084 Query 164239 GATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCG 164298 | || | ||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 37083 ATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTTTAGGTATGCG 37024 Query 164299 TCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGT 164358 ||||||||| || || || ||||| ||||| || ||||| || | |||||| ||| | | Sbjct 37023 TCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGCAGTATTCTTAAT 36964 Query 164359 CTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTT 164418 ||| || |||| ||||||||||||||||||| |||||| | || |||||||| || || Sbjct 36963 CTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTT 36904 Query 164419 CAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCATATGCT 164478 ||||| |||| | || ||||| |||||||||||||| | |||||||| ||||| ||| | Sbjct 36903 CAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCCATTCCACATGTT 36844 Query 164479 CGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTAC 164538 || || || ||||| ||||| ||||| | ||| || ||||||||||| | || || Sbjct 36843 AGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGGTTCATTAGTAAC 36784 Query 164539 TTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATGGTTACAAGTTTGG 164598 ||| || | | ||||| || || ||||| || || ||| | |||||||| ||||| Sbjct 36783 TTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGGTTACAAATTTGG 36724 Query 164599 TCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTGGTCGTCTGATTTT 164658 ||| |||||||| || ||||||||||| || || |||||||||||||||||| | || || Sbjct 36723 TCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGGTCGTTTAATCTT 36664 Query 164659 CCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGT 164718 ||||||||| || ||||||||||| ||||| | ||||||||| | || || ||||| || Sbjct 36663 CCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCGGT 36604 Query 164719 TGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACC-ATGGCATTCAACCTCAACGGTT 164777 || | || ||||| |||||| | || ||| || | |||||||||||| | ||||| | Sbjct 36603 AATCTGCATTTGGTTCACTGCTTTAGGT-TTATCAACTATGGCATTCAACTTAAACGGGT 36545 Query 164778 TCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACG 164837 ||||||||||||| || | | ||| || |||||||| | ||||| ||||| ||| Sbjct 36544 TCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACACTTGGGCTGACA 36485 Query 164838 TTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCC 164897 | ||||||||||| | || |||||||| |||||||| ||||| ||||||||||||| Sbjct 36484 TCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGCTCACAACTTCC 36425 Query 164898 CTCTCGACCTTGCTGCTG 164915 | | ||| | ||| ||| Sbjct 36424 CATTAGACTTAGCTTCTG 36407 Score = 771 bits (854), Expect = 0.0 Identities = 797/1038 (77%), Gaps = 4/1038 (0%) Strand=Plus/Plus Query 163880 ATGACTGCTACACTTTCACAACAACGTTCTACTAACACCTGGGAACAATTCTGTAACTGG 163939 ||||||||| |||||| | | || || ||| | |||| | || ||| | ||| Sbjct 108206 ATGACTGCTGTTCTTTCAAACCGTGGTACTTCTAGCCTTTGGGCTCGTTTTTGTGAGTGG 108265 Query 163940 GTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTGATGATTCCCTGC 163999 | |||||||| || || ||||| || ||||||||||||| || | ||||| || ||| Sbjct 108266 ATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTAATGATCCCTTGC 108325 Query 164000 CTGCTGGCAGCGACTACATGT-TTCATCATCGCCTTCATCGGTGCTCCTCCTGTGGACAT 164058 | | |||| || | ||| ||||| |||| |||||||| |||||||| || || || Sbjct 108326 TTATTAACAGCTACATC-TGTATTCATTATCGGCTTCATCGCAGCTCCTCCAGTAGATAT 108384 Query 164059 CGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGG 164118 |||||| ||||| || || || ||||||| | | || || ||||||||||||||||| Sbjct 108385 CGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAACATCATCTCTGG 108444 Query 164119 TGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGC 164178 |||| |||||||| | |||||||| |||||||| ||||||||||| || |||||||| || Sbjct 108445 TGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGC 108504 Query 164179 AAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCT 164238 | | ||||| ||| | |||||||||||||||| |||| | | || | ||||||| | Sbjct 108505 TTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTGCCACTTCTT 108564 Query 164239 GATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCG 164298 | || | ||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 108565 ATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTTTAGGTATGCG 108624 Query 164299 TCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGT 164358 ||||||||| || || || ||||| ||||| || ||||| || | |||||| ||| | | Sbjct 108625 TCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGCAGTATTCTTAAT 108684 Query 164359 CTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTT 164418 ||| || |||| ||||||||||||||||||| |||||| | || |||||||| || || Sbjct 108685 CTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTT 108744 Query 164419 CAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCATATGCT 164478 ||||| |||| | || ||||| |||||||||||||| | |||||||| ||||| ||| | Sbjct 108745 CAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCCATTCCACATGTT 108804 Query 164479 CGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTAC 164538 || || || ||||| ||||| ||||| | ||| || ||||||||||| | || || Sbjct 108805 AGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGGTTCATTAGTAAC 108864 Query 164539 TTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATGGTTACAAGTTTGG 164598 ||| || | | ||||| || || ||||| || || ||| | |||||||| ||||| Sbjct 108865 TTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGGTTACAAATTTGG 108924 Query 164599 TCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTGGTCGTCTGATTTT 164658 ||| |||||||| || ||||||||||| || || |||||||||||||||||| | || || Sbjct 108925 TCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGGTCGTTTAATCTT 108984 Query 164659 CCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGT 164718 ||||||||| || ||||||||||| ||||| | ||||||||| | || || ||||| || Sbjct 108985 CCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCGGT 109044 Query 164719 TGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGC-ACCATGGCATTCAACCTCAACGGTT 164777 || | || ||||| |||||| | || ||| | || |||||||||||| | ||||| | Sbjct 109045 AATCTGCATTTGGTTCACTGCTTTAGG-TTTATCAACTATGGCATTCAACTTAAACGGGT 109103 Query 164778 TCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACG 164837 ||||||||||||| || | | ||| || |||||||| | ||||| ||||| ||| Sbjct 109104 TCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACACTTGGGCTGACA 109163 Query 164838 TTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCC 164897 | ||||||||||| | || |||||||| |||||||| ||||| ||||||||||||| Sbjct 109164 TCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGCTCACAACTTCC 109223 Query 164898 CTCTCGACCTTGCTGCTG 164915 | | ||| | ||| ||| Sbjct 109224 CATTAGACTTAGCTTCTG 109241 Score = 576 bits (638), Expect = 2e-159 Identities = 724/993 (73%), Gaps = 8/993 (1%) Strand=Plus/Plus Query 165182 AGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGC 165241 ||||||||| |||||||| || ||||| || |||||| | || || ||| ||| |||| Sbjct 121731 AGACCGTTTTGTTTTTGTAGGTTGGTCAGGTCTTCTTTTATTACCTTGTGCGTATTTTGC 121790 Query 165242 TCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTTGC 165301 | || |||||| |||||||||| || || || || |||||| || || || | || Sbjct 121791 ATTAGGTGGTTGGTTTACTGGGACAACATTTGTTACTTCTTGGTACACACATGGTTTAGC 121850 Query 165302 GAGTTCCTATCTTGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGC 165361 | ||| || | || ||| ||||| | ||||| |||||||| ||||||||| || Sbjct 121851 AACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCAGTTTCGACTCCAGCAAACAG 121910 Query 165362 TATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTG 165421 ||||| ||||||| | | || | ||||| ||||| ||||||| ||||| | || || Sbjct 121911 TATGGCTCATTCTTTATTATTTATTTGGGGACCTGAAGCTCAAGGTGACTTTACACGTTG 121970 Query 165422 GTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGG 165481 ||| ||| | || || | ||||||||||| || || || || || |||| | || || Sbjct 121971 GTGTCAATTAGGTGGTTTATGGACTTTTGTAGCACTGCATGGTGCTTTTGGTTTAATTGG 122030 Query 165482 TTTCATGCTTCGCCAGTTTGAACTGGCACGACTTATCGGTA----TTCGTCCTTACAATG 165537 ||| ||| | || || |||||| | ||||| || ||| | ||||| || || | Sbjct 122031 TTTTATGTTACGTCAATTTGAAATTGCACGT----TCAGTAAACTTACGTCCATATAACG 122086 Query 165538 CTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCTGG 165597 | ||||||||||||| || ||||||||||| ||| ||| ||| | || || ||| | | Sbjct 122087 CAATTGCTTTCTCTGCACCAATTGCTGTATTTGTTTCTGTATTTTTAATTTACCCTTTAG 122146 Query 165598 GACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGC 165657 | ||||| ||||||||||| || || || || || || || ||||| || | Sbjct 122147 GTCAATCTGGTTGGTTCTTCGCCCCTAGTTTTGGTGTTGCCGCTATTTTCCGTTTTATCT 122206 Query 165658 TCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGCAG 165717 | ||| ||||||| ||||| |||||||| || || || || ||||||||||| || || | Sbjct 122207 TATTCTTCCAAGGTTTCCACAACTGGACACTTAACCCATTCCACATGATGGGAGTTGCTG 122266 Query 165718 GTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGT 165777 || | ||||| | || | | | ||| |||||||||| ||||||||| |||||| | | Sbjct 122267 GTGTTTTAGGTGCGGCTCTATTATGTGCTATTCATGGTGCTACAGTAGAAAATACTCTTT 122326 Query 165778 ATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAA 165837 ||||||||||| || ||||| ||| |||||| | ||| || | || |||| Sbjct 122327 TCGAAGATGGTGATGGTGCTAACACATTCCGTGCATTTAACCCTACGCAAGCTGAAGAAA 122386 Query 165838 CTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCA 165897 |||| || ||||| || ||||| | |||||||| || ||||||||| | ||||| | Sbjct 122387 CTTACTCTATGGTAACAGCTAATAGATTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAA 122446 Query 165898 ATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTT 165957 | || |||||| | |||||||||||| | ||||||||||| | || ||||||| | Sbjct 122447 ACAAACGTTGGTTACACTTCTTTATGTTATTTGTTCCTGTGACAGGTCTTTGGATGTCTG 122506 Query 165958 CTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGA 166017 |||||||| | | ||| | || || || | |||||||| || || || || || |||| Sbjct 122507 CTATTGGTGTTGTAGGTTTAGCTCTTAACTTACGTGCTTACGACTTCGTTTCACAAGAGA 122566 Query 166018 TTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAATG 166077 || | |||||||| |||||||| |||||||| ||||| || |||||| | || ||||||| Sbjct 122567 TTCGTGCTGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAAACCTTCTTCTTAATG 122626 Query 166078 AAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTCCCTG 166137 |||| ||||||| ||| ||||| | |||||| || || || ||| || ||||| | Sbjct 122627 AAGGTATCCGTGCTTGGATGGCTGCACAAGACCAGCCACACGAACGCTTAGTATTCCCAG 122686 Query 166138 AAGAAGTCTTGCCAAGAGGCAACGCACTTTAAA 166170 ||||||| || || | || ||||| || |||| Sbjct 122687 AAGAAGTATTACCTCGTGGTAACGCTCTATAAA 122719 Score = 91.5 bits (100), Expect = 2e-13 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 18255 TTAGCTCAGTTGGTAGAGCACCTGCTTTGCAAGCAGGCTGTCAGGAGTTCGAGTCTCCTA 18314 ||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||| Sbjct 40270 TTAGCTCAGTTGGTAGAGCACCTGCTTTGCACGCAGGGGGTCAGGAGTTCGACTCTCCTA 40329 Score = 91.5 bits (100), Expect = 2e-13 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 18255 TTAGCTCAGTTGGTAGAGCACCTGCTTTGCAAGCAGGCTGTCAGGAGTTCGAGTCTCCTA 18314 ||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||| Sbjct 105378 TTAGCTCAGTTGGTAGAGCACCTGCTTTGCACGCAGGGGGTCAGGAGTTCGACTCTCCTA 105319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557607557030400