Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq6720 746 0.0 >seq6720 Length=135362 Score = 746 bits (826), Expect = 0.0 Identities = 794/1041 (76%), Gaps = 10/1041 (1%) Strand=Plus/Minus Query 177550 ATGACTGCAACTCTTTCACAACAACGTTCTACTAATTCCTGGGAACAATTCTGTAACTGG 177609 |||||||| ||||||| | | || || ||| |||| | || ||| | ||| Sbjct 37442 ATGACTGCTGTTCTTTCAAACCGTGGTACTTCTAGCCTTTGGGCTCGTTTTTGTGAGTGG 37383 Query 177610 GTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACG 177669 | || || || | || ||| | || |||||||||||||||| | ||||||||| Sbjct 37382 ATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTAATGATCCCTTGC 37323 Query 177670 CTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCCTCCTGTGGACAT 177728 | | | ||| | |||||| ||||| ||| ||| |||| |||||||| || || || Sbjct 37322 TTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAGCTCCTCCAGTAGATAT 37264 Query 177729 CGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAACATCATTTCTGG 177788 ||| || |||||||| || || ||||||| | | || || ||||||||||| ||||| Sbjct 37263 CGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAACATCATCTCTGG 37204 Query 177789 TGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCATCTGGGAAGCAGC 177848 |||| || | ||| | |||||||| || ||||| |||||||| || || |||||||| || Sbjct 37203 TGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGC 37144 Query 177849 TTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTATCTTCCACTTCCT 177908 |||| | || |||||| | ||||| |||||||||| |||| | | | | ||||||| | Sbjct 37143 TTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTGCCACTTCTT 37084 Query 177909 GATCGGTATCTATGCAT---ACATGGGTCGTGAGTGGGAACTTTCTTACCGCCTAGGTAT 177965 | ||| | ||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct 37083 ATTAGGTGT---TGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTTTAGGTAT 37027 Query 177966 GCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGCTGTATTCCT 178025 |||||| ||||||||||| || ||||| |||||||| || || ||| |||| |||||| | Sbjct 37026 GCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGCAGTATTCTT 36967 Query 178026 TGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTATCAGTGGCAC 178085 | || || |||| ||||||||||||||||| | |||||| | |||||| ||| || Sbjct 36966 AATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTAC 36907 Query 178086 CTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACAT 178145 ||||||| |||| | || |||||||| ||||||||||| | |||||||| |||||||| Sbjct 36906 TTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCCATTCCACAT 36847 Query 178146 GTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGGTTCTCTGGT 178205 ||| || || |||||||| ||||||||||| | ||| || ||||||||||| | || Sbjct 36846 GTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGGTTCATTAGT 36787 Query 178206 TACTTCCTCGCTGGTTCGTGAAACCACCGAGAACGAAAGTCAGAACTATGGTTACAAGTT 178265 ||||| || | | |||||||| || || |||||| | ||| | |||||||| || Sbjct 36786 AACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGGTTACAAATT 36727 Query 178266 CGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTCGGTCGCCTGAT 178325 ||||||||||||||||| ||||||||||| ||||| || |||||||| ||||| | || Sbjct 36726 TGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGGTCGTTTAAT 36667 Query 178326 CTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCC 178385 ||||||||||||||| ||||||||||| ||||| | ||||||||| | || || ||||| Sbjct 36666 CTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCC 36607 Query 178386 TGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACC-ATGGCATTCAACCTCAACG 178444 || || | || |||||||||||| | ||| ||| || | |||||||||||| | |||| Sbjct 36606 GGTAATCTGCATTTGGTTCACTGCTTTAGGT-TTATCAACTATGGCATTCAACTTAAACG 36548 Query 178445 GTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACACCTGGGCAG 178504 | |||||||||||||| || | | ||| || || || | ||||| ||||| | Sbjct 36547 GGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACACTTGGGCTG 36488 Query 178505 ACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATGCTCACAACT 178564 || | ||||||||||| | ||||||||||| |||||||| ||||| |||||||||| Sbjct 36487 ACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGCTCACAACT 36428 Query 178565 TCCCTCTTGACCTCGCTGCTG 178585 |||| | ||| | ||| ||| Sbjct 36427 TCCCATTAGACTTAGCTTCTG 36407 Score = 746 bits (826), Expect = 0.0 Identities = 794/1041 (76%), Gaps = 10/1041 (1%) Strand=Plus/Plus Query 177550 ATGACTGCAACTCTTTCACAACAACGTTCTACTAATTCCTGGGAACAATTCTGTAACTGG 177609 |||||||| ||||||| | | || || ||| |||| | || ||| | ||| Sbjct 108206 ATGACTGCTGTTCTTTCAAACCGTGGTACTTCTAGCCTTTGGGCTCGTTTTTGTGAGTGG 108265 Query 177610 GTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACG 177669 | || || || | || ||| | || |||||||||||||||| | ||||||||| Sbjct 108266 ATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTAATGATCCCTTGC 108325 Query 177670 CTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCCTCCTGTGGACAT 177728 | | | ||| | |||||| ||||| ||| ||| |||| |||||||| || || || Sbjct 108326 TTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAGCTCCTCCAGTAGATAT 108384 Query 177729 CGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAACATCATTTCTGG 177788 ||| || |||||||| || || ||||||| | | || || ||||||||||| ||||| Sbjct 108385 CGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAACATCATCTCTGG 108444 Query 177789 TGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCATCTGGGAAGCAGC 177848 |||| || | ||| | |||||||| || ||||| |||||||| || || |||||||| || Sbjct 108445 TGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGC 108504 Query 177849 TTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTATCTTCCACTTCCT 177908 |||| | || |||||| | ||||| |||||||||| |||| | | | | ||||||| | Sbjct 108505 TTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTGCCACTTCTT 108564 Query 177909 GATCGGTATCTATGCA---TACATGGGTCGTGAGTGGGAACTTTCTTACCGCCTAGGTAT 177965 | ||| | |||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 108565 ATTAGGTGT---TGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTTTAGGTAT 108621 Query 177966 GCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGCTGTATTCCT 178025 |||||| ||||||||||| || ||||| |||||||| || || ||| |||| |||||| | Sbjct 108622 GCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGCAGTATTCTT 108681 Query 178026 TGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTATCAGTGGCAC 178085 | || || |||| ||||||||||||||||| | |||||| | |||||| ||| || Sbjct 108682 AATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTAC 108741 Query 178086 CTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACAT 178145 ||||||| |||| | || |||||||| ||||||||||| | |||||||| |||||||| Sbjct 108742 TTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCCATTCCACAT 108801 Query 178146 GTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGGTTCTCTGGT 178205 ||| || || |||||||| ||||||||||| | ||| || ||||||||||| | || Sbjct 108802 GTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGGTTCATTAGT 108861 Query 178206 TACTTCCTCGCTGGTTCGTGAAACCACCGAGAACGAAAGTCAGAACTATGGTTACAAGTT 178265 ||||| || | | |||||||| || || |||||| | ||| | |||||||| || Sbjct 108862 AACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGGTTACAAATT 108921 Query 178266 CGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTCGGTCGCCTGAT 178325 ||||||||||||||||| ||||||||||| ||||| || |||||||| ||||| | || Sbjct 108922 TGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGGTCGTTTAAT 108981 Query 178326 CTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCC 178385 ||||||||||||||| ||||||||||| ||||| | ||||||||| | || || ||||| Sbjct 108982 CTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCC 109041 Query 178386 TGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGC-ACCATGGCATTCAACCTCAACG 178444 || || | || |||||||||||| | ||| ||| | || |||||||||||| | |||| Sbjct 109042 GGTAATCTGCATTTGGTTCACTGCTTTAGGT-TTATCAACTATGGCATTCAACTTAAACG 109100 Query 178445 GTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACACCTGGGCAG 178504 | |||||||||||||| || | | ||| || || || | ||||| ||||| | Sbjct 109101 GGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACACTTGGGCTG 109160 Query 178505 ACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATGCTCACAACT 178564 || | ||||||||||| | ||||||||||| |||||||| ||||| |||||||||| Sbjct 109161 ACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGCTCACAACT 109220 Query 178565 TCCCTCTTGACCTCGCTGCTG 178585 |||| | ||| | ||| ||| Sbjct 109221 TCCCATTAGACTTAGCTTCTG 109241 Score = 551 bits (610), Expect = 7e-152 Identities = 725/1002 (72%), Gaps = 2/1002 (0%) Strand=Plus/Plus Query 178851 GATGACTGGCTTAAG-CGTGATCGGTTCGTTTTTGTTGGTTGGTCAGGTCTTCTTCTGTT 178909 ||||||||| ||| | | || || || |||||||| |||||||||||||||||| | || Sbjct 121714 GATGACTGG-TTACGTCAAGACCGTTTTGTTTTTGTAGGTTGGTCAGGTCTTCTTTTATT 121772 Query 178910 CCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACATTCGTCACCTCGTG 178969 ||| ||| || | ||| | || |||||| | || || |||||||| || || || || Sbjct 121773 ACCTTGTGCGTATTTTGCATTAGGTGGTTGGTTTACTGGGACAACATTTGTTACTTCTTG 121832 Query 178970 GTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCTTACTGCTGCTGT 179029 ||| || || || | || |||| || | || || ||||| ||| | |||||||| || Sbjct 121833 GTACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCAGT 121892 Query 179030 ATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGGGGTCCAGAAGCTCA 179089 || ||||| || || | | | ||||| || | || | ||||| || |||||||| Sbjct 121893 TTCGACTCCAGCAAACAGTATGGCTCATTCTTTATTATTTATTTGGGGACCTGAAGCTCA 121952 Query 179090 GGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTTGTGGCGCTCCACGG 179149 || || || || ||| ||| | || || ||||| ||||||| || || || || Sbjct 121953 AGGTGACTTTACACGTTGGTGTCAATTAGGTGGTTTATGGACTTTTGTAGCACTGCATGG 122012 Query 179150 TGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCACGTCTAGTCGGTAT 179209 ||| || | | | || ||||| ||| | || || |||||||| |||||| ||| | Sbjct 122013 TGCTTTTGGTTTAATTGGTTTTATGTTACGTCAATTTGAAATTGCACGTTCAGTAAACTT 122072 Query 179210 TCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGTGTCTGTTTTTCT 179269 ||||| || || ||||| || || |||| ||||||||||| ||||| ||||| ||| | Sbjct 122073 ACGTCCATATAACGCAATTGCTTTCTCTGCACCAATTGCTGTATTTGTTTCTGTATTTTT 122132 Query 179270 CATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGCGAT 179329 || || ||| | || || || |||||||| || || ||||| ||||| || || Sbjct 122133 AATTTACCCTTTAGGTCAATCTGGTTGGTTCTTCGCCCCTAGTTTTGGTGTTGCCGCTAT 122192 Query 179330 TTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAACCCGTTCCACAT 179389 |||||| || | | ||| | || || |||||||||||||| || ||||| |||||||| Sbjct 122193 TTTCCGTTTTATCTTATTCTTCCAAGGTTTCCACAACTGGACACTTAACCCATTCCACAT 122252 Query 179390 GATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCATGGTGCTACAGT 179449 |||||| || || ||| | | || | || | | ||||| ||||||||||||||||| Sbjct 122253 GATGGGAGTTGCTGGTGTTTTAGGTGCGGCTCTATTATGTGCTATTCATGGTGCTACAGT 122312 Query 179450 AGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGGCATTCGAGCCTAC 179509 ||| || || || || ||||| |||| | || |||||| ||||| | ||||| Sbjct 122313 AGAAAATACTCTTTTCGAAGATGGTGATGGTGCTAACACATTCCGTGCATTTAACCCTAC 122372 Query 179510 ACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTCTCAGATCTTTGG 179569 |||| || || || || || ||||| || || || | |||||||| || || ||||| Sbjct 122373 GCAAGCTGAAGAAACTTACTCTATGGTAACAGCTAATAGATTCTGGTCACAAATTTTTGG 122432 Query 179570 TATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGTTCCTGTCATGGG 179629 | | || || || || |||||| |||| ||||||||||| ||||||||||| | || Sbjct 122433 TGTAGCTTTTTCAAACAAACGTTGGTTACACTTCTTTATGTTATTTGTTCCTGTGACAGG 122492 Query 179630 TCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCACTTAACCTTAGAGCTTATGACTT 179689 |||||||| ||| |||||| || | ||| | || |||||| | | ||||| ||||| Sbjct 122493 TCTTTGGATGTCTGCTATTGGTGTTGTAGGTTTAGCTCTTAACTTACGTGCTTACGACTT 122552 Query 179690 TGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGAA 179749 |||||||||||||| | || || || ||||| || || || || ||||| || || || Sbjct 122553 CGTTTCACAAGAGATTCGTGCTGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAAA 122612 Query 179750 CATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGATCAACCACATGAAAA 179809 | | || | ||||||||| | |||||||||||||| || || || ||||| ||| Sbjct 122613 CCTTCTTCTTAATGAAGGTATCCGTGCTTGGATGGCTGCACAAGACCAGCCACACGAACG 122672 Query 179810 CTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851 ||| ||||| || ||||||||||| || | || |||||||| Sbjct 122673 CTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGCTCT 122714 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 18368 AGGGTAGGTGTCCGAGTGGTTAATGGAGGCGGACTGTAAATCCGCTGGCTCTGCCTACGG 18427 ||||| | || ||||||||||||||| |||||| |||||||||||||||| ||||||| Sbjct 113588 AGGGTCGATGCCCGAGTGGTTAATGGGGGCGGATTGTAAATCCGCTGGCTACGCCTACGT 113647 Query 18428 GGGTTCAAATCC 18439 ||||| ||||| Sbjct 113648 TGGTTCGAATCC 113659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596257110195200