Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq6720 742 0.0 >seq6720 Length=135362 Score = 742 bits (822), Expect = 0.0 Identities = 786/1036 (76%), Gaps = 0/1036 (0%) Strand=Plus/Minus Query 169304 ATGACTGCTACACTTTCACAACAACGTTCTACTAACACCTGGGAACAATTCTGTAACTGG 169363 ||||||||| |||||| | | || || ||| | |||| | || ||| | ||| Sbjct 37442 ATGACTGCTGTTCTTTCAAACCGTGGTACTTCTAGCCTTTGGGCTCGTTTTTGTGAGTGG 37383 Query 169364 GTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTGATGATCCCCTGC 169423 | || || ||||| |||||| | || ||||||||||||| || | |||||||| ||| Sbjct 37382 ATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTAATGATCCCTTGC 37323 Query 169424 CTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCCCCTGTGGACATC 169483 | | |||| || || ||||| |||| |||||||| ||||| || || || ||| Sbjct 37322 TTATTAACAGCTACATCTGTATTCATTATCGGCTTCATCGCAGCTCCTCCAGTAGATATC 37263 Query 169484 GACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGT 169543 || || ||||| || || ||| |||||||| | | || ||||||||||||||||||||| Sbjct 37262 GATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAACATCATCTCTGGT 37203 Query 169544 GCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATCTGGGAAGCAGCA 169603 ||| || | || | || ||||||||||||||||||||||| || || |||||||| || Sbjct 37202 GCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 37143 Query 169604 AGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTC 169663 | | || || ||||| |||||||||||||||| |||| | | || | ||||||| | Sbjct 37142 TCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTGCCACTTCTTA 37083 Query 169664 ATCGGCATCTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATCGTCTGGGTATGCGC 169723 | || | ||||||||||||||||||||||| | || || ||| | |||||||| Sbjct 37082 TTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTTTAGGTATGCGT 37023 Query 169724 CCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTC 169783 ||||||||||||||||||||||| ||||| || || || || | || || ||| | || Sbjct 37022 CCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGCAGTATTCTTAATC 36963 Query 169784 TACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTT 169843 ||||| | || ||||| || |||||||| | ||||||| | |||||||| || || || Sbjct 36962 TACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTC 36903 Query 169844 AACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACCCCTTCCACATGCTT 169903 |||| |||| | || |||||||||||||||||||| | |||||||| ||||||||| | Sbjct 36902 AACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCCATTCCACATGTTA 36843 Query 169904 GGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGTAGCCTCGTCACT 169963 |||||||| || || |||||||| || | || || ||||||||| | || ||| Sbjct 36842 GGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGGTTCATTAGTAACT 36783 Query 169964 TCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTATGGTTACAAGTTCGGT 170023 || | |||||||||| || || ||||| || ||| | |||||||| || ||| Sbjct 36782 TCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGGTTACAAATTTGGT 36723 Query 170024 CAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCGGTCGCCTGATCTTC 170083 |||||||||||||| ||||||||||| || || ||||||||||| ||||| | |||||| Sbjct 36722 CAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGGTCGTTTAATCTTC 36663 Query 170084 CAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTT 170143 |||||||| || ||||||||||| |||||| | ||||||||| | || || ||||| || Sbjct 36662 CAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCGGTA 36603 Query 170144 GTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAACCTGAACGGTTTC 170203 | |||| |||||||| ||| | ||| | || || ||||| |||||| | ||||| ||| Sbjct 36602 ATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCAACTTAAACGGGTTC 36543 Query 170204 AACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTT 170263 ||||||||||| || | | ||| || |||||||| | ||||| ||||| ||| | Sbjct 36542 AACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACACTTGGGCTGACATC 36483 Query 170264 CTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCT 170323 ||||||||||| | || |||||||| |||||||| ||||| |||||||||||||| Sbjct 36482 ATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGCTCACAACTTCCCA 36423 Query 170324 CTCGACCTCGCTGCTG 170339 | ||| | ||| ||| Sbjct 36422 TTAGACTTAGCTTCTG 36407 Score = 742 bits (822), Expect = 0.0 Identities = 786/1036 (76%), Gaps = 0/1036 (0%) Strand=Plus/Plus Query 169304 ATGACTGCTACACTTTCACAACAACGTTCTACTAACACCTGGGAACAATTCTGTAACTGG 169363 ||||||||| |||||| | | || || ||| | |||| | || ||| | ||| Sbjct 108206 ATGACTGCTGTTCTTTCAAACCGTGGTACTTCTAGCCTTTGGGCTCGTTTTTGTGAGTGG 108265 Query 169364 GTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTGATGATCCCCTGC 169423 | || || ||||| |||||| | || ||||||||||||| || | |||||||| ||| Sbjct 108266 ATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTAATGATCCCTTGC 108325 Query 169424 CTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCCCCTGTGGACATC 169483 | | |||| || || ||||| |||| |||||||| ||||| || || || ||| Sbjct 108326 TTATTAACAGCTACATCTGTATTCATTATCGGCTTCATCGCAGCTCCTCCAGTAGATATC 108385 Query 169484 GACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGT 169543 || || ||||| || || ||| |||||||| | | || ||||||||||||||||||||| Sbjct 108386 GATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAACATCATCTCTGGT 108445 Query 169544 GCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATCTGGGAAGCAGCA 169603 ||| || | || | || ||||||||||||||||||||||| || || |||||||| || Sbjct 108446 GCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 108505 Query 169604 AGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTC 169663 | | || || ||||| |||||||||||||||| |||| | | || | ||||||| | Sbjct 108506 TCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTGCCACTTCTTA 108565 Query 169664 ATCGGCATCTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATCGTCTGGGTATGCGC 169723 | || | ||||||||||||||||||||||| | || || ||| | |||||||| Sbjct 108566 TTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTTTAGGTATGCGT 108625 Query 169724 CCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTC 169783 ||||||||||||||||||||||| ||||| || || || || | || || ||| | || Sbjct 108626 CCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGCAGTATTCTTAATC 108685 Query 169784 TACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTT 169843 ||||| | || ||||| || |||||||| | ||||||| | |||||||| || || || Sbjct 108686 TACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTC 108745 Query 169844 AACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACCCCTTCCACATGCTT 169903 |||| |||| | || |||||||||||||||||||| | |||||||| ||||||||| | Sbjct 108746 AACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCCATTCCACATGTTA 108805 Query 169904 GGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGTAGCCTCGTCACT 169963 |||||||| || || |||||||| || | || || ||||||||| | || ||| Sbjct 108806 GGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGGTTCATTAGTAACT 108865 Query 169964 TCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTATGGTTACAAGTTCGGT 170023 || | |||||||||| || || ||||| || ||| | |||||||| || ||| Sbjct 108866 TCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGGTTACAAATTTGGT 108925 Query 170024 CAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCGGTCGCCTGATCTTC 170083 |||||||||||||| ||||||||||| || || ||||||||||| ||||| | |||||| Sbjct 108926 CAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGGTCGTTTAATCTTC 108985 Query 170084 CAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTT 170143 |||||||| || ||||||||||| |||||| | ||||||||| | || || ||||| || Sbjct 108986 CAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCGGTA 109045 Query 170144 GTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAACCTGAACGGTTTC 170203 | |||| |||||||| ||| | ||| | || || ||||| |||||| | ||||| ||| Sbjct 109046 ATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCAACTTAAACGGGTTC 109105 Query 170204 AACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTT 170263 ||||||||||| || | | ||| || |||||||| | ||||| ||||| ||| | Sbjct 109106 AACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACACTTGGGCTGACATC 109165 Query 170264 CTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCT 170323 ||||||||||| | || |||||||| |||||||| ||||| |||||||||||||| Sbjct 109166 ATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGCTCACAACTTCCCA 109225 Query 170324 CTCGACCTCGCTGCTG 170339 | ||| | ||| ||| Sbjct 109226 TTAGACTTAGCTTCTG 109241 Score = 522 bits (578), Expect = 3e-143 Identities = 721/1005 (72%), Gaps = 8/1005 (1%) Strand=Plus/Plus Query 170607 GATGACTGGCTTAAACGT---GATCGGTTTGTATTTGTGGGCTGGTCTGGACTTCTTCTT 170663 ||||||||| | |||| || || ||||| ||||| || ||||| || |||||| | Sbjct 121714 GATGACTGGTT---ACGTCAAGACCGTTTTGTTTTTGTAGGTTGGTCAGGTCTTCTTTTA 121770 Query 170664 TTTCCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGACATTTGTTACAAGT 170723 || || ||| ||| ||||| | || || ||| |||| || || ||||||||||| | Sbjct 121771 TTACCTTGTGCGTATTTTGCATTAGGTGGTTGGTTTACTGGGACAACATTTGTTACTTCT 121830 Query 170724 TGGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGGTGCTAATTTCCTTACAGCGGCT 170783 |||||||| || || | |||| ||| ||| | |||||| ||| ||| | || || || Sbjct 121831 TGGTACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCA 121890 Query 170784 GTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 170843 || || || || || | ||||| ||||||| | | | ||||||| ||||| || Sbjct 121891 GTTTCGACTCCAGCAAACAGTATGGCTCATTCTTTATTATTTATTTGGGGACCTGAAGCT 121950 Query 170844 CAGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCAC 170903 || || || || ||| |||| ||| | || || | |||| |||||| || || || Sbjct 121951 CAAGGTGACTTTACACGTTGGTGTCAATTAGGTGGTTTATGGACTTTTGTAGCACTGCAT 122010 Query 170904 GGAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCGTCTCGTAGGG 170963 || || |||| | | || ||||| ||| | || || |||||||| ||| ||| Sbjct 122011 GGTGCTTTTGGTTTAATTGGTTTTATGTTACGTCAATTTGAAATTGCACGTTCAGTAAAC 122070 Query 170964 ATTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTC 171023 | | || || || ||||| |||||||||| || || ||||| ||||| || || Sbjct 122071 TTACGTCCATATAACGCAATTGCTTTCTCTGCACCAATTGCTGTATTTGTTTCTGTATTT 122130 Query 171024 CTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCA 171083 | || || ||| | || || || ||||||||||||| ||| ||||| ||||| || Sbjct 122131 TTAATTTACCCTTTAGGTCAATCTGGTTGGTTCTTCGCCCCTAGTTTTGGTGTTGCCGCT 122190 Query 171084 ATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCAT 171143 || ||||| || | | ||| | ||||||||||||||||||||||| || ||||| || Sbjct 122191 ATTTTCCGTTTTATCTTATTCTTCCAAGGTTTCCACAACTGGACACTTAACCCATTCCAC 122250 Query 171144 ATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACA 171203 |||||||| ||||| ||| | | || | || | | | ||| |||||||||| |||| Sbjct 122251 ATGATGGGAGTTGCTGGTGTTTTAGGTGCGGCTCTATTATGTGCTATTCATGGTGCTACA 122310 Query 171204 GTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACACG 171263 ||||| |||||| | | |||||||||||| || ||||| || |||||| || | Sbjct 122311 GTAGAAAATACTCTTTTCGAAGATGGTGATGGTGCTAACACATTCCGTGCATTTAACCCT 122370 Query 171264 ACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTT 171323 || || | ||||| || || |||||||| || |||||| | |||||||| || |||||| Sbjct 122371 ACGCAAGCTGAAGAAACTTACTCTATGGTAACAGCTAATAGATTCTGGTCACAAATTTTT 122430 Query 171324 GGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATG 171383 ||| | || || || || |||||||| || ||||||||| | ||||||||||| | Sbjct 122431 GGTGTAGCTTTTTCAAACAAACGTTGGTTACACTTCTTTATGTTATTTGTTCCTGTGACA 122490 Query 171384 GGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAATCTTA-GGGCTTATGA 171442 ||||||||| | | | | || || | ||| | |||||||| |||| | ||||| || Sbjct 122491 GGTCTTTGGATGTCTGCTATTGGTGTTGTAGGTTTAGCTCTTAA-CTTACGTGCTTACGA 122549 Query 171443 TTTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCAA 171502 ||||| || ||| | | || || ||||||||||| || || || ||||| || || Sbjct 122550 CTTCGTTTCACAAGAGATTCGTGCTGCTGAAGATCCAGAATTTGAAACTTTCTACACTAA 122609 Query 171503 GAACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGTAGACCAACCACATGA 171562 ||| | || | ||||||||| | ||||| |||||||| || |||||| ||||| || Sbjct 122610 AAACCTTCTTCTTAATGAAGGTATCCGTGCTTGGATGGCTGCACAAGACCAGCCACACGA 122669 Query 171563 AAACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAATGCACT 171607 | ||| || |||||||| ||||| |||||||||| || || || Sbjct 122670 ACGCTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGCTCT 122714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592148655334400